Gene omics information

Query gene ID	Zm.12921.1.A1_at
Gene name	hypothetical protein LOC100273635
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.12921.1.A1_at	CA401711	hypothetical protein LOC100273635	-	6e+0	At5g27290	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.435.1.S1_at	AF069910.1	pyruvate dehydrogenase E1 beta subunit isoform 3	-	3e-28	At5g50850	MAB1 (MACCI-BOU)	S.X.	H.G.	Please select
0.21	15.5	Zm.3760.1.S1_at	AW056221	hypothetical protein LOC100216911	-	3e-12	At1g31480	SGR2 (SHOOT GRAVITROPISM 2)	S.X.	H.G.	Please select
0.18	11.6	Zm.17557.1.A1_at	CK370056	-	-	1e+0	At5g17080	cathepsin-related	S.X.	H.G.	Please select
0.12	5.9	Zm.17677.1.S1_at	CK369609	-	-	4e-1	At1g77220	unknown protein	S.X.	H.G.	Please select
0.04	1.5	Zm.6273.1.A1_at	AY108611.1	patellin-5	-	2e-5	At3g51670	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	97.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.5	92.6	GSM206287	Left pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	34	Zm.5207.1.S1_at	AY107278.1	hypothetical protein LOC100192596	-	5e-23	At4g03120	proline-rich family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.3592.1.S1_at	CA401155	-	-	1e+1	At5g57230	-	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.2357.1.S1_at	CF006853	hypothetical protein LOC100192698	-	1e+1	At4g10140	unknown protein	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.8753.1.A1_at	BM075492	-	-	2e+1	At5g37820	NIP4	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.8875.1.S1_at	CF055809	30S ribosomal protein S13	-	5e-1	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.4839.1.S1_at	AY103614.1	aldehyde dehydrogenase family 7 member A1	-	6e-33	At1g54100	ALDH7B4 (Aldehyde Dehydrogenase 7B4)	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.4870.2.S1_a_at	CF023956	dehydrin	-	3e-6	At3g50980	XERO1 (DEHYDRIN XERO 1)	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.4246.1.A1_at	AI438854	hypothetical protein LOC100192626	-	2e-4	At5g39510	SGR4 (SHOOT GRAVITROPSIM 4)	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.383.1.S1_s_at	AF023165.1	leucine-rich repeat transmembrane protein kinase 2	-	1e-22	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e+0	32	Arabidopsis thaliana	At5g27290	832787	unknown protein	F:unknown;P:unknown;C:chloroplast;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	HgAffx.14061.1.S1_at	CB373872	-	-	4e+0	At4g25010	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.24	3e-46	184	Hordeum vulgare	Contig12731_at	Contig12731	-	-	2e-4	At3g59380	FTA (FARNESYLTRANSFERASE A)	C.G.	S.X.	Please select
0.26	1e-48	194	Oryza sativa	Os09g0514400	AK060892.1	-	Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit (EC2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alphasubunit) (Ras proteins prenyltransferase alpha)(FTase-alpha) (Type I protein geranyl-geranyltransferasealpha subunit) (GGTase-I-alpha)	7e-4	At3g59380	FTA (FARNESYLTRANSFERASE A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.221722.1.S1_at	pmrna38753	hypothetical protein	-	1e+0	Atmg01410	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	1e-164	579	Triticum aestivum	Ta.13125.1.S1_at	CD490995	-	-	2e+0	At3g59380	FTA (FARNESYLTRANSFERASE A)	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1617505_at	CF514355	-	-	1e+0	At4g10080	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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