Gene omics information

Query gene ID	Zm.12898.1.A1_at
Gene name	hypothetical protein LOC100274425
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.79	92.8	Zm.12898.1.A1_at	CA401243	hypothetical protein LOC100274425	-	8e+0	At3g25950	-	S.X.	H.G.	Please select
0.96	99.8	Zm.4811.1.A1_x_at	CF624047	UDP-N-acetylglucosamine pyrophosphorylase	-	6e-5	At2g35020	UTP--glucose-1-phosphate uridylyltransferase family protein	S.X.	H.G.	Please select
0.88	96.7	Zm.6822.2.S1_a_at	CO518852	receptor expression-enhancing protein 3	-	3e-2	At5g42560	abscisic acid-responsive HVA22 family protein	S.X.	H.G.	Please select
0.88	96.7	Zm.5962.1.S1_at	AY241545.1	glyoxalase I	-	1e-17	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	S.X.	H.G.	Please select
0.88	96.7	Zm.3350.2.A1_at	CA400679	U6 snRNA-associated Sm-like protein LSm4	-	7e-34	At5g27720	emb1644 (embryo defective 1644)	S.X.	H.G.	Please select
0.88	96.7	Zm.3221.1.S1_at	CF035537	-	-	5e-39	At5g45140	NRPC2	S.X.	H.G.	Please select
0.86	96.3	Zm.13188.3.S1_x_at	BM076074	hypothetical protein LOC100193240	-	8e-6	At2g37270	ATRPS5B (RIBOSOMAL PROTEIN 5B)	S.X.	H.G.	Please select
0.81	94.3	Zm.7422.1.A1_at	CO525742	anthocyanidin 3-O-glucosyltransferase	-	2e+0	At2g01250	60S ribosomal protein L7 (RPL7B)	S.X.	H.G.	Please select
0.78	92.5	Zm.15553.1.S1_at	CD219266	hypothetical protein LOC100193348	-	3e-7	At2g17720	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please select
0.72	88.6	Zm.17200.1.S1_at	CK145428	-	-	3e+0	At4g24060	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.5	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-2	40	Zm.662.1.S1_at	AF262623.1	FDR3	-	8e+0	At2g45630	oxidoreductase family protein	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.18513.1.S1_at	CO531043	hypothetical protein LOC100192940	-	3e+0	At3g60670	zinc-binding protein, putative	C.G.	S.X.	Please select
0.04	6e-2	38	Zm.4106.1.S1_at	BQ048471	-	-	1e+1	At4g29035	-	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.19010.1.A1_at	CO526711	hypothetical protein LOC100276214	-	2e-1	At1g13690	ATE1	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.17970.1.A1_at	CK827393	hypothetical protein LOC100274947	-	5e+0	At5g50930	DNA binding	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.17597.1.A1_at	BM349649	ATP synthase3	-	3e-2	At5g47030	ATP synthase delta' chain, mitochondrial	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.13728.2.S1_at	AY106266.1	-	-	1e-14	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.13728.1.S1_at	AF332172.1	alpha-expansin 4	-	2e-19	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.13728.2.S1_a_at	AY106266.1	alpha-expansin 4	-	1e-14	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	8e+0	32	Arabidopsis thaliana	At3g25950	822192	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	2e-13	77	Glycine max	GmaAffx.19383.1.S1_at	BI497920	-	-	4e-3	At3g25950	-	C.G.	S.X.	Please select
0.41	2e-63	242	Hordeum vulgare	Contig14423_at	Contig14423	-	-	2e+0	At3g25160	ER lumen protein retaining receptor family protein	C.G.	S.X.	Please select
0.44	6e-144	511	Oryza sativa	Os05g0302600	AK061205.1	-	TRAM, LAG1 and CLN8 homology domain containingprotein	3e+0	At5g03790	HB51	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.224027.1.S1_at	pmrna42259	hypothetical protein	-	4e+0	At5g19257	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-1	38	Triticum aestivum	TaAffx.114269.1.S1_at	CA595919	-	-	4e+0	At2g36835	unknown protein	C.G.	S.X.	Please select
0.06	1e-5	50	Vitis vinifera	1621794_at	CA810917	hypothetical protein LOC100267906	-	4e-2	At5g14280	DNA-binding storekeeper protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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