Gene omics information

Query gene ID	Zm.12878.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.47	59.9	Zm.12878.1.S1_at	CA400963	-	-	9e-3	At5g11560	catalytic	S.X.	H.G.	Please select
0.47	59.9	ZmAffx.199.1.S1_at	AI668491	-	-	7e-1	At1g14687	AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.963.1.A1_at	AI833792	-	-	8e-1	At4g04620	ATG8B (autophagy 8b)	S.X.	H.G.	Please select
0.30	29.8	Zm.19201.2.S1_a_at	CO526388	hypothetical protein LOC100216991	-	2e+0	At5g39650	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.8586.1.A1_at	BM338441	-	-	1e+0	At3g13227	serine-rich protein-related	S.X.	H.G.	Please select
0.23	18.6	ZmAffx.46.1.S1_at	AI664945	-	-	3e+0	At5g62260	DNA binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.8	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	7e-165	579	Zm.14354.2.A1_x_at	CA399715	-	-	2e-9	At5g11560	catalytic	C.G.	S.X.	Please select
0.30	7e-165	579	Zm.14354.2.A1_a_at	CA399715	-	-	2e-9	At5g11560	catalytic	C.G.	S.X.	Please select
0.05	9e-1	34	Zm.14354.3.S1_a_at	AW172114	-	-	2e-13	At4g33865	40S ribosomal protein S29 (RPS29C)	C.G.	S.X.	Please select
0.05	9e-1	34	Zm.14354.3.S1_x_at	AW172114	40S ribosomal protein S29	-	2e-13	At4g33865	40S ribosomal protein S29 (RPS29C)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.9568.2.A1_at	CA405278	Hypothetical protein LOC100191463	-	2e-45	At3g03250	UGP (UDP-glucose pyrophosphorylase)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.7010.2.A1_at	AY106286.1	-	-	1e-5	At1g56110	NOP56 (Arabidopsis homolog of nucleolar protein Nop56)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.7010.1.A1_a_at	CF049770	nucleolar protein Nop56	-	1e-30	At3g12860	nucleolar protein Nop56, putative	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.12297.1.A1_at	CK347346	CONSTANS-like protein CO8	-	2e-1	At5g39740	60S ribosomal protein L5 (RPL5B)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.10554.1.A1_at	CA398680	-	-	3e-10	At2g44090	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	9e-3	42	Arabidopsis thaliana	At5g11560	831028	catalytic	F:catalytic activity;P:unknown;C:endoplasmic reticulum, plasma membrane, vacuole;MFOBPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	9e-16	85	Glycine max	Gma.4035.1.S1_at	BQ453456	-	-	1e-38	At5g11560	catalytic	C.G.	S.X.	Please select
0.33	2e-171	601	Hordeum vulgare	Contig7198_at	Contig7198	-	-	5e-9	At5g11560	catalytic	C.G.	S.X.	Please select
0.22	6e-98	359	Oryza sativa	Os05g0230600	AK070398.1	-	WD40-like domain containing protein	1e-7	At5g11560	catalytic	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	3e-9	63	Populus trichocarpa	Ptp.8067.1.S1_at	CV263519	hypothetical protein	-	9e-18	At5g11560	catalytic	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.32	2e-136	486	Triticum aestivum	Ta.7610.1.S1_a_at	CD889532	-	-	1e-6	At5g11560	catalytic	C.G.	S.X.	Please select
0.21	3e-15	81	Vitis vinifera	1620763_at	BQ792258	hypothetical protein LOC100264673	-	1e-38	At5g11560	catalytic	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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