Gene omics information

Query gene ID	Zm.12848.1.A1_at
Gene name	hypothetical protein LOC100273763
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.12848.1.A1_at	AW037142	hypothetical protein LOC100273763	-	5e-1	At1g18780	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.55	71.6	Zm.13797.2.A1_at	AY105820.1	hypothetical protein LOC100279789	-	8e-4	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	S.X.	H.G.	Please select
0.50	65.7	Zm.2263.1.A1_at	AW330859	-	-	7e-5	At2g43050	ATPMEPCRD	S.X.	H.G.	Please select
0.33	36.0	Zm.13562.1.A1_at	AY108090.1	PCO099415 protein	-	6e-3	At1g54730	sugar transporter, putative	S.X.	H.G.	Please select
0.31	31.6	Zm.10793.1.A1_at	CF635868	-	-	5e-9	At4g04770	ATABC1 (ATP BINDING CASSETTE PROTEIN 1)	S.X.	H.G.	Please select
0.29	28.1	Zm.5225.1.A1_at	AI615012	hypothetical protein LOC100273591	-	4e-2	At5g48740	leucine-rich repeat family protein / protein kinase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	96.1	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.3	96.1	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.2	96.0	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.1	95.9	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.9	95.7	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.9	95.7	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.8	95.5	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.8	95.5	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.8	95.5	GSM205375	Mo17xB73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.8	95.5	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	9e-1	34	Zm.9103.1.A1_at	BM266606	hypothetical protein LOC100193021	-	2e+0	At2g16835	water channel protein, putative	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.1757.1.S1_at	BG841022	R2R3MYB-domain protein	-	8e-3	At2g16720	MYB7 (MYB DOMAIN PROTEIN 7)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.7682.1.A1_at	BM079476	-	-	7e-1	At1g61340	F-box family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.6601.2.A1_at	BM078978	hypothetical protein LOC100191456	-	1e-17	At3g18190	chaperonin, putative	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.6601.2.A1_a_at	BM078978	hypothetical protein LOC100191456	-	1e-17	At3g18190	chaperonin, putative	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.6133.1.A1_at	AW067175	-	-	2e-1	At3g57280	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.5503.1.A1_at	AW000029	hypothetical protein LOC100192784	-	9e-3	At4g35920	MCA1 (mid1-complementing activity 1)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.12483.1.A1_at	AI396412	hypothetical protein LOC100273621	-	5e+0	At5g25540	CID6 (CTC-Interacting Domain 6)	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.8703.1.A1_at	BM337839	-	-	1e+0	At4g25330	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	Arabidopsis thaliana	At1g18780	838460	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;MPOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-3	44	Glycine max	Gma.4969.1.A1_at	BI969785	-	-	4e-15	At4g24610	unknown protein	C.G.	S.X.	Please select
0.47	3e-47	188	Hordeum vulgare	Contig13033_at	Contig13033	-	-	2e-6	At4g24610	unknown protein	C.G.	S.X.	Please select
0.40	7e-79	295	Oryza sativa	Os02g0760200	AK063964.1	-	Conserved hypothetical protein	1e-5	At4g24610	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	2e-10	67	Populus trichocarpa	Ptp.3142.1.A1_at	CV267297	hypothetical protein	-	4e-11	At4g24610	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.29	2e-43	176	Triticum aestivum	Ta.7725.2.S1_x_at	CD924175	-	-	5e-6	At4g24610	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Vitis vinifera	1608988_at	CB345849	hypothetical protein LOC100249728	-	1e+0	At3g50560	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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