CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.12821.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.12821.1.A1_at CA398688 - - 1e+1 At5g47320 RPS19 (RIBOSOMAL PROTEIN S19) S.X. H.G.
0.67 85.8 Zm.3137.1.S1_at AY111766.1 - - 6e+0 At5g24780 VSP1 (VEGETATIVE STORAGE PROTEIN 1) S.X. H.G.
0.60 77.8 Zm.12634.4.S1_a_at CF057123 60S ribosomal protein L23 - 8e-61 At1g04480 60S ribosomal protein L23 (RPL23A) S.X. H.G.
0.40 48.5 Zm.1881.1.S1_at CF011561 - - 5e-1 At3g17590 BSH (BUSHY GROWTH) S.X. H.G.
0.33 36.0 Zm.253.1.A1_at CF020390 hypothetical protein LOC100279053 - 5e+0 At5g29807 unknown protein S.X. H.G.
0.21 15.5 Zm.2529.1.A1_s_at BQ539485 - - 1e+0 At3g17240 mtLPD2 (LIPOAMIDE DEHYDROGENASE 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
46.8 100.0 GSM162264 Mutant 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
38.7 99.9 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
31.4 99.8 GSM205433 B73 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
28.6 99.7 GSM205425 B73 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
22.5 99.5 GSM205421 B73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
16.4 99.0 GSM205436 B73xMo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
15.7 99.0 GSM205429 B73xMo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
7.8 97.9 GSM205434 Mo17xB73 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.7 97.6 GSM205423 B73xMo17 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
5.7 97.2 GSM162266 Wild type 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-2 40 Zm.6005.1.A1_at AY108292.1 - - 5e-1 At4g18500 unknown protein C.G. S.X.
0.01 2e-2 40 Zm.6005.1.S1_a_at AY108292.1 MYB transcription factor TaMYB1 - 2e+0 At1g29460 auxin-responsive protein, putative C.G. S.X.
0.01 4e-1 36 Zm.8062.1.A1_at BM380417 - - 2e-5 At1g68920 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.01 4e-1 36 Zm.5605.1.S1_at CO528780 - - 1e+0 At1g18680 HNH endonuclease domain-containing protein C.G. S.X.
0.01 4e-1 36 Zm.4615.1.A1_at AY078158.1 Non-hemic monooxygenase - 2e-44 At2g29390 SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) C.G. S.X.
0.02 4e-1 36 Zm.4284.1.A1_at CF634282 hypothetical protein LOC100193400 - 2e+0 At3g28370 unknown protein C.G. S.X.
0.01 4e-1 36 Zm.2365.1.A1_at AY105210.1 hypothetical protein LOC100191199 - 3e-28 At1g64040 TOPP3 C.G. S.X.
0.01 4e-1 36 Zm.2365.2.S1_at AI739988 hypothetical protein LOC100216757 - 1e-14 At1g64040 TOPP3 C.G. S.X.
0.01 4e-1 36 Zm.2365.1.A1_a_at AY105210.1 hypothetical protein LOC100191199 /// hypothetical protein LOC100216757 - 3e-28 At1g64040 TOPP3 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+1 32 Arabidopsis thaliana At5g47320 834779 RPS19 (RIBOSOMAL PROTEIN S19) Nuclear encoded mitochondrial ribosome subunit. - - - C.G. S.X.
0.01 3e-1 38 Glycine max PsAffx.C104000007_at PsAffx.C104000007 - - 9e-1 At1g20050 HYD1 (HYDRA1) C.G. S.X.
0.27 1e-78 293 Hordeum vulgare Contig11375_at Contig11375 - - 4e-2 At1g51700 ADOF1 C.G. S.X.
0.25 3e-82 307 Oryza sativa Os.16692.2.S1_at - - - 0 C.G. S.X.
0.02 5e+0 34 Populus trichocarpa PtpAffx.217157.1.S1_at pmrna32308 hypothetical protein - 4e+1 At5g57000 unknown protein C.G. S.X.
0.08 1e-15 85 Triticum aestivum TaAffx.25094.1.S1_at CA706641 - - 3e+0 At5g50335 unknown protein C.G. S.X.
0.02 2e+1 30 Vitis vinifera 1620944_at CF373593 hypothetical protein LOC100254978 - 1e+0 At5g49260 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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