Gene omics information

Query gene ID	Zm.12789.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.12789.1.A1_at	CA398899	-	-	9e-3	At3g04510	LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)	S.X.	H.G.	Please select
0.55	71.6	Zm.13397.1.A1_at	CF006845	Hypothetical protein LOC100193697	-	4e-14	At2g35530	bZIP transcription factor family protein	S.X.	H.G.	Please select
0.55	71.6	Zm.9238.1.A1_at	CO533275	-	-	5e-2	At2g23320	WRKY15	S.X.	H.G.	Please select
0.40	48.5	Zm.6438.1.A1_at	BM268459	hypothetical protein LOC100191671	-	1e-30	At1g22170	phosphoglycerate/bisphosphoglycerate mutase family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.9237.1.A1_at	BM350875	-	-	4e-1	At3g07750	3' exoribonuclease family domain 1-containing protein	S.X.	H.G.	Please select
0.33	36.0	Zm.5166.1.S1_at	AI612220	-	-	1e+0	At2g19690	PLA2-BETA (PHOSPHOLIPASE A2-BETA)	S.X.	H.G.	Please select
0.28	28.1	Zm.6475.2.A1_a_at	CO531953	hypothetical protein LOC100273857 /// PHD finger protein	-	3e-21	At1g14510	AL7 (ALFIN-LIKE 7)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.4	99.8	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
18.3	99.2	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
17.1	99.1	GSM205431	Mo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
15.3	98.9	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
12.5	98.7	GSM205434	Mo17xB73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
11.5	98.6	GSM205420	Mo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
11.0	98.5	GSM205429	B73xMo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
10.8	98.5	GSM205436	B73xMo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
10.7	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	2e-11	69	Zm.7780.1.A1_at	CD433445	hypothetical protein LOC100274595	-	1e-7	At4g19230	CYP707A1	C.G.	S.X.	Please select
0.06	2e-11	69	Zm.7780.1.S1_at	CD433445	-	-	1e-7	At4g19230	CYP707A1	C.G.	S.X.	Please select
0.04	6e-5	48	Zm.390.1.S1_at	U32579.1	dwarf plant3	-	4e+0	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.02	3e-4	46	Zm.7282.1.A1_at	AB016810.1	ferredoxin2	-	3e-2	At1g10960	ATFD1 (FERREDOXIN 1)	C.G.	S.X.	Please select
0.02	4e-3	42	Zm.8940.1.A1_a_at	BM351784	-	-	2e+0	At1g61575	unknown protein	C.G.	S.X.	Please select
0.02	4e-3	42	Zm.17715.1.A1_at	CF629905	-	-	5e+0	At5g54095	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.18711.1.A1_at	AY110469.1	-	-	6e-11	At2g43240	nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.18711.1.S1_at	AY110469.1	nucleotide-sugar transporter/ sugar porter	-	6e-11	At3g59360	UTR6 (UDP-GALACTOSE TRANSPORTER 6)	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.9391.1.A2_at	CO523934	hypothetical protein LOC100279653	-	2e-105	At1g09770	ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-3	42	Arabidopsis thaliana	At3g04510	819607	LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	5e-2	40	Glycine max	Gma.1679.1.A1_at	CD395442	-	-	5e-3	At3g24250	glycine-rich protein	C.G.	S.X.	Please select
0.07	3e-16	85	Hordeum vulgare	Contig11708_at	Contig11708	-	-	1e-1	At4g19230	CYP707A1	C.G.	S.X.	Please select
0.28	8e-122	438	Oryza sativa	Os08g0472800	AK120757.1	-	E-class P450, group I family protein	8e-8	At3g19270	CYP707A4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.216417.1.S1_at	pmrna31182	hypothetical protein	-	9e+0	At5g19980	integral membrane family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	7e-19	95	Triticum aestivum	Ta.22981.3.S1_a_at	BJ291883	-	-	1e-6	At4g19230	CYP707A1	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1621364_s_at	CF511664	hypothetical protein LOC100252604	-	2e-12	At2g24940	AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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