Gene omics information

Query gene ID	Zm.12740.1.S1_at
Gene name	hypothetical protein LOC100194228
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.12740.1.S1_at	CA404183	hypothetical protein LOC100194228	-	4e-12	At5g40440	ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3)	S.X.	H.G.	Please select
0.55	71.6	Zm.1274.1.S1_at	CO533399	hypothetical protein LOC100272786	-	7e-1	At2g38550	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.4084.1.A1_at	CK145425	CONSTANS interacting protein 6	-	8e-1	At5g28800	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.5121.1.S1_at	CD441115	-	-	2e+0	At2g15570	thioredoxin M-type 3, chloroplast (TRX-M3)	S.X.	H.G.	Please select
0.30	29.8	Zm.13386.1.S1_s_at	AF457988.1	penicillin-binding protein 2	-	5e-1	At3g54826	-	S.X.	H.G.	Please select
0.12	5.9	ZmAffx.706.1.A1_at	AI738209	-	-	8e-1	At1g23590	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.9	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-2	40	ZmAffx.1427.1.S1_at	11990232-12	-	-	5e-170	Atcg00190	-	C.G.	S.X.	Please select
0.01	9e-2	38	Zm.8933.1.A1_at	BM080140	NADH-ubiquinone oxidoreductase 39 kDa subunit	-	5e-12	At2g20360	binding / catalytic/ coenzyme binding	C.G.	S.X.	Please select
0.02	9e-2	38	Zm.8617.1.A1_at	BM074921	hypothetical protein LOC100194322	-	2e+0	At4g29810	ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.6555.2.S1_at	CD446565	hypothetical protein LOC100273907	-	1e-31	At3g11710	ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1)	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.13054.1.A1_at	CA403903	hypothetical protein LOC100273794	-	9e-6	At2g43080	AT-P4H-1 (A. THALIANA P4H ISOFORM 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.12504.1.S1_at	AY105770.1	hypothetical protein LOC100274017	-	4e-3	At5g47720	acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative	C.G.	S.X.	Please select
0.02	5e+0	32	ZmAffx.1534.1.S1_at	40794996-126	-	-	9e+0	At5g52730	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.6241.1.A1_at	BQ487255	hypothetical protein LOC100274594	-	3e-1	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.6108.2.S1_at	CA399319	-	-	5e-37	At1g15290	binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	4e-12	73	Arabidopsis thaliana	At5g40440	834042	ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3)	encodes a mitogen-activated protein kinase kinase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-2	40	Glycine max	GmaAffx.38649.1.S1_at	AW349731	-	-	4e-17	At5g40440	ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3)	C.G.	S.X.	Please select
0.14	1e-19	97	Hordeum vulgare	Contig18528_at	Contig18528	-	-	6e+0	At5g19151	unknown protein	C.G.	S.X.	Please select
0.57	0	638	Oryza sativa	Os06g0473200	AK119330.1	-	NPK2	2e-5	At5g40440	ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	38	Populus trichocarpa	PtpAffx.109349.1.S1_s_at	CN524654	hypothetical protein	-	1e-65	At5g56580	MKK6 (MAP KINASE KINASE 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.25	3e-28	127	Triticum aestivum	TaAffx.12045.1.A1_at	BJ307455	-	-	1e+0	At3g53770	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please select
0.02	6e-2	38	Vitis vinifera	1620721_at	CB980796	hypothetical protein LOC100244983	-	1e+0	At3g07510	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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