Gene omics information

Query gene ID	Zm.12691.1.A1_at
Gene name	zinc finger C-x8-C-x5-C-x3-H type family protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.12691.1.A1_at	BU645208	zinc finger C-x8-C-x5-C-x3-H type family protein	-	2e+0	At4g16990	RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3)	S.X.	H.G.	Please select
0.83	95.6	Zm.1269.1.A1_at	BM350862	-	-	5e+0	At5g53980	ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)	S.X.	H.G.	Please select
0.80	94.0	Zm.12690.1.S1_at	CA831966	hypothetical protein LOC100191357	-	5e-23	At4g12790	ATP-binding family protein	S.X.	H.G.	Please select
0.77	92.1	Zm.12225.1.A1_at	CA403034	DIP1	-	2e+0	At3g14340	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.7127.1.A1_at	BM266653	nonspecific lipid-transfer protein	-	8e+0	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	S.X.	H.G.	Please select
0.23	18.6	Zm.221.1.A1_at	U28376.1	calcium-dependent protein kinase	-	4e-25	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.7	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-2	38	Zm.682.1.S1_at	AY029314.1	barley mlo defense gene homolog3	-	9e-1	At4g02600	MLO1	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.2855.1.A1_at	BM351276	inner envelope membrane protein	-	6e-23	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please select
0.03	3e+0	32	Zm.9942.1.A1_at	CK368883	hypothetical protein LOC100274544	-	8e-2	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.3621.1.A1_at	AW438135	genetic modifier	-	1e-10	At4g11570	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.2482.1.A1_at	BM333007	16.9 kDa class I heat shock protein 1	-	1e-4	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.2313.1.A1_at	AW438144	zinc-binding protein	-	4e-1	At1g31160	zinc-binding protein, putative / protein kinase C inhibitor, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.2313.1.S1_at	CF625540	-	-	4e-1	At1g31160	zinc-binding protein, putative / protein kinase C inhibitor, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.15067.1.S1_at	BG873877	hypothetical protein LOC100274150	-	3e-2	At3g54210	ribosomal protein L17 family protein	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.888.1.S1_at	CK828040	hypothetical protein LOC100216750	-	1e-7	At1g08880	H2AXA	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At4g16990	827407	RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3)	F:transmembrane receptor activity, ATP binding;P:defense response to fungus, incompatible interaction, jasmonic acid and ethylene-dependent systemic resistance, callose deposition during defense response, defense response;C:intrinsic to membrane;PMB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	9e+0	32	Glycine max	HgAffx.16579.1.S1_at	CB279777	-	-	9e-1	At4g13200	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	32	Hordeum vulgare	EBro08_SQ011_H01_at	EBro08_SQ011_H01	-	-	5e+0	At5g18970	AWPM-19-like membrane family protein	C.G.	S.X.	Please select
0.07	3e-19	97	Oryza sativa	Os04g0671800	AK070857.1	-	Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein	3e-1	At2g39540	gibberellin-regulated family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	PtpAffx.215198.1.S1_s_at	pmrna29249	hypothetical protein	-	9e-1	At5g46295	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e-1	36	Triticum aestivum	TaAffx.27234.1.S1_at	CA679486	-	-	1e+0	At5g51400	unknown protein	C.G.	S.X.	Please select
0.02	7e+0	30	Vitis vinifera	1619853_at	BM437498	similar to SWIB complex BAF60b domain-containing protein	-	5e-31	At4g26810	SWIB complex BAF60b domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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