Gene omics information

Query gene ID	Zm.12690.1.S1_at
Gene name	hypothetical protein LOC100191357
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.12690.1.S1_at	CA831966	hypothetical protein LOC100191357	-	5e-23	At4g12790	ATP-binding family protein	S.X.	H.G.	Please select
0.91	99.0	Zm.12691.1.A1_at	BU645208	zinc finger C-x8-C-x5-C-x3-H type family protein	-	2e+0	At4g16990	RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3)	S.X.	H.G.	Please select
0.73	89.9	Zm.12801.1.A1_at	CO524502	MON1	-	2e+0	At4g15053	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.1269.1.A1_at	BM350862	-	-	5e+0	At5g53980	ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)	S.X.	H.G.	Please select
0.61	79.5	Zm.12225.1.A1_at	CA403034	DIP1	-	2e+0	At3g14340	unknown protein	S.X.	H.G.	Please select
0.19	12.8	Zm.221.1.A1_at	U28376.1	calcium-dependent protein kinase	-	4e-25	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	96.7	GSM205421	B73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.7	96.5	GSM205436	B73xMo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.3	96.1	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.2	96.0	GSM205433	B73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.2	96.0	GSM205423	B73xMo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.1	95.9	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.9	95.7	GSM205425	B73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.8	95.5	GSM205424	Mo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.8	95.5	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.7	95.4	GSM205434	Mo17xB73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	ZmAffx.567.1.A1_at	AI714637	hypothetical protein LOC100192551	-	2e-1	At5g50760	auxin-responsive family protein	C.G.	S.X.	Please select
0.02	2e-1	36	ZmAffx.567.1.S1_at	AI714637	Hypothetical protein LOC100192551	-	2e-1	At5g50760	auxin-responsive family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.7154.1.A1_at	AY111597.1	-	-	4e-7	At3g61490	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.2607.1.S1_at	AY106763.1	-	-	4e-2	At3g01390	VMA10 (VACUOLAR MEMBRANE ATPASE 10)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.215.1.A1_at	AW065215	DNA mismatch repair protein MSH2	-	4e-26	At3g18524	MSH2 (MUTS HOMOLOG 2)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.18247.1.A1_at	AY110411.1	-	-	2e-30	At4g17190	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.18247.1.S1_at	AY110411.1	Hypothetical protein LOC100192004	-	2e-30	At4g17190	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.1505.1.S1_at	CA401127	-	-	4e-2	At2g22000	PROPEP6 (Elicitor peptide 6 precursor)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.14474.1.S1_a_at	CD001875	hypothetical protein LOC100273044	-	1e-33	At2g34560	katanin, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	5e-23	109	Arabidopsis thaliana	At4g12790	826891	ATP-binding family protein	F:nucleotide binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;MOFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	1e-5	52	Glycine max	GmaAffx.18860.1.S1_at	BE612054	-	-	3e-20	At4g12790	ATP-binding family protein	C.G.	S.X.	Please select
0.55	0	662	Hordeum vulgare	Contig8639_at	Contig8639	-	-	2e-10	At4g12790	ATP-binding family protein	C.G.	S.X.	Please select
0.54	0	652	Oryza sativa	Os03g0337700	AK065183.1	-	Conserved hypothetical ATP binding protein familyprotein	7e-7	At4g12790	ATP-binding family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.32	3e-25	117	Populus trichocarpa	PtpAffx.69905.1.A1_at	CV245342	hypothetical protein	-	4e-27	At4g12790	ATP-binding family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	3e-89	329	Triticum aestivum	TaAffx.2372.2.S1_at	BJ253908	-	-	7e-2	At4g12790	ATP-binding family protein	C.G.	S.X.	Please select
0.03	3e-3	42	Vitis vinifera	1621212_at	BQ794170	hypothetical protein LOC100260205	-	7e-5	At4g12790	ATP-binding family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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