Gene omics information

Query gene ID	Zm.1269.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.1269.1.A1_at	BM350862	-	-	5e+0	At5g53980	ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)	S.X.	H.G.	Please select
0.83	95.6	Zm.12691.1.A1_at	BU645208	zinc finger C-x8-C-x5-C-x3-H type family protein	-	2e+0	At4g16990	RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3)	S.X.	H.G.	Please select
0.80	94.0	Zm.12690.1.S1_at	CA831966	hypothetical protein LOC100191357	-	5e-23	At4g12790	ATP-binding family protein	S.X.	H.G.	Please select
0.77	92.1	Zm.12225.1.A1_at	CA403034	DIP1	-	2e+0	At3g14340	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.7127.1.A1_at	BM266653	nonspecific lipid-transfer protein	-	8e+0	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	S.X.	H.G.	Please select
0.23	18.6	Zm.221.1.A1_at	U28376.1	calcium-dependent protein kinase	-	4e-25	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.6	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.4	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	36	Zm.749.1.S1_at	AY291061.1	photosystem II subunit PsbS1	-	8e-7	At1g44575	NPQ4 (NONPHOTOCHEMICAL QUENCHING)	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.19039.1.S1_at	BF728709	mitochondrial carnitine/acylcarnitine carrier-like protein	-	2e-2	At1g79900	BAC2	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.8953.1.A1_at	AY104644.1	hypothetical protein LOC100280204	-	1e-3	At5g18630	lipase class 3 family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5791.1.A1_at	AY103953.1	suppressor of G2 allele of SKP1	-	9e-7	At4g23570	SGT1A	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5474.1.S1_at	CO531804	hypothetical protein LOC100194401	-	2e-3	At4g11450	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5313.2.A1_at	CA398418	60S ribosomal protein L12	-	9e-9	At2g37190	60S ribosomal protein L12 (RPL12A)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5267.1.A1_at	BM340432	copine-1	-	1e-11	At3g01650	RGLG1 (RING domain Ligase1)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5319.1.S1_a_at	AY103567.1	lipoxygenase	-	4e-7	At3g22400	LOX5	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4830.1.S1_at	CF633606	CHCH domain containing protein	-	9e+0	At5g65600	legume lectin family protein / protein kinase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At5g53980	835481	ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.93194.1.S1_s_at	CF808919	-	-	8e-1	At5g09805	IDL3 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3)	C.G.	S.X.	Please select
0.05	6e-1	34	Hordeum vulgare	Contig4445_at	Contig4445	-	-	3e-1	At2g32190	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	36	Oryza sativa	Os06g0205100	AK062487.1	-	P-type R2R3 Myb protein (Fragment)	1e+0	At1g03730	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.29876.1.S1_at	CX182992	hypothetical protein	-	2e-9	At5g22000	RHF2A (RING-H2 GROUP F2A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	Ta.14866.1.S1_at	CA683420	-	-	2e+0	At2g45130	SPX3 (SPX DOMAIN GENE 3)	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1619862_at	CB979196	hypothetical protein LOC100251016	-	3e-1	At4g32470	ubiquinol-cytochrome C reductase complex 14 kDa protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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