Gene omics information

Query gene ID	Zm.12657.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.12657.1.A1_at	CA826570	-	-	1e-1	At1g11580	PMEPCRA (METHYLESTERASE PCR A)	S.X.	H.G.	Please select
0.83	95.6	Zm.2315.1.A1_at	BG841450	nodulin-like protein	-	4e-4	At3g18200	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.83	95.6	Zm.13362.1.S1_at	CA828313	calmodulin binding protein	-	3e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	S.X.	H.G.	Please select
0.63	81.1	Zm.2318.1.A1_at	BM074442	-	-	9e-1	At1g23710	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.17690.2.A1_a_at	CF624554	dirigent-like protein	-	1e+0	At4g18070	unknown protein	S.X.	H.G.	Please select
0.38	44.2	Zm.16211.1.S1_at	CN845499	-	-	2e+0	At2g25590	agenet domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.5	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.1	99.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.1	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.5	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.9	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.1	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	0	932	Zm.3885.1.S1_at	CK145224	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	C.G.	S.X.	Please select
0.28	2e-35	149	Zm.12262.1.S1_at	CA826732	-	-	5e-2	At3g06830	pectinesterase family protein	C.G.	S.X.	Please select
0.13	2e-16	85	Zm.14962.1.A1_at	BM268018	hypothetical protein LOC100280285	-	2e-1	At3g59010	pectinesterase family protein	C.G.	S.X.	Please select
0.12	1e-11	69	Zm.1975.1.S1_at	BF729513	pectinesterase-1	-	7e-3	At3g05610	pectinesterase family protein	C.G.	S.X.	Please select
0.04	3e-3	42	Zm.2263.1.A1_at	AW330859	-	-	7e-5	At2g43050	ATPMEPCRD	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.1997.1.A1_at	BM075855	-	-	6e+0	At3g63390	unknown protein	C.G.	S.X.	Please select
0.03	1e-2	40	Zm.12511.1.S1_at	AW062063	hypothetical protein LOC100276976	-	5e+0	At5g53110	-	C.G.	S.X.	Please select
0.03	5e-2	38	Zm.10429.1.S1_at	BQ528642	hypothetical protein LOC100194282	-	2e+1	At5g37480	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	ZmAffx.821.1.A1_at	AI770497	-	-	3e+0	At3g21840	ASK7 (ARABIDOPSIS SKP1-LIKE 7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	Arabidopsis thaliana	At1g11580	837701	PMEPCRA (METHYLESTERASE PCR A)	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plasma membrane, plant-type cell wall;PBFMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	7e-7	56	Glycine max	GmaAffx.71146.1.S1_at	BM527181	-	-	8e-2	At2g47040	VGD1 (VANGUARD1)	C.G.	S.X.	Please select
0.13	4e-15	81	Hordeum vulgare	Contig13318_at	Contig13318	-	-	1e-2	At3g59010	pectinesterase family protein	C.G.	S.X.	Please select
0.41	0	706	Oryza sativa	Os04g0458900	AK121454.1	-	Pectin methylesterase-like protein	7e-2	At2g47030	VGDH1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-4	48	Populus trichocarpa	PtpAffx.202816.1.S1_at	pmrna5585	hypothetical protein	-	5e-2	At3g62170	VGDH2 (Vanguard 1 homolog 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.55	0	781	Triticum aestivum	Ta.5588.1.A1_at	BJ249930	-	-	9e-3	At3g06830	pectinesterase family protein	C.G.	S.X.	Please select
0.08	9e-6	50	Vitis vinifera	1610996_at	BQ794786	pectinesterase	-	2e-9	At1g53840	ATPME1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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