Gene omics information

Query gene ID	Zm.12634.4.S1_a_at
Gene name	60S ribosomal protein L23
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.12634.4.S1_a_at	CF057123	60S ribosomal protein L23	-	8e-61	At1g04480	60S ribosomal protein L23 (RPL23A)	S.X.	H.G.	Please select
0.67	85.8	Zm.3137.1.S1_at	AY111766.1	-	-	6e+0	At5g24780	VSP1 (VEGETATIVE STORAGE PROTEIN 1)	S.X.	H.G.	Please select
0.55	71.6	Zm.12821.1.A1_at	CA398688	-	-	1e+1	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	S.X.	H.G.	Please select
0.50	65.7	Zm.697.1.A1_a_at	AB102957.1	histidine kinase 3	-	1e-17	At5g35750	AHK2 (ARABIDOPSIS HISTIDINE KINASE 2)	S.X.	H.G.	Please select
0.40	48.5	Zm.1881.1.S1_at	CF011561	-	-	5e-1	At3g17590	BSH (BUSHY GROWTH)	S.X.	H.G.	Please select
0.36	41.3	Zm.6684.1.S1_x_at	CF019431	60S ribosomal protein L29	-	4e-19	At3g06700	60S ribosomal protein L29 (RPL29A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.6	92.9	GSM205374	B73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.4	92.2	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.3	91.7	GSM202316	Mo17xB73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.3	91.7	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.3	91.7	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.2	91.3	GSM205372	B73xMo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.2	91.3	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.2	91.3	GSM202309	Mo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.2	91.3	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.2	91.3	GSM202311	Mo17xB73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.88	0	932	Zm.12634.4.S1_x_at	CF057123	60S ribosomal protein L23	-	8e-61	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select
0.60	3e-83	307	Zm.12634.5.S1_x_at	BQ539541	-	-	3e-14	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select
0.60	3e-83	307	Zm.12634.5.S1_at	BQ539541	-	-	3e-14	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select
0.43	2e-81	301	Zm.12634.6.S1_x_at	CD446319	hypothetical protein LOC100193874	-	8e-55	At3g04400	emb2171 (embryo defective 2171)	C.G.	S.X.	Please select
0.43	2e-81	301	Zm.12634.6.S1_at	CD446319	hypothetical protein LOC100193874	-	8e-55	At3g04400	emb2171 (embryo defective 2171)	C.G.	S.X.	Please select
0.42	3e-74	278	Zm.12634.1.A1_x_at	CF048221	hypothetical protein LOC100194224 /// 60S ribosomal protein L23 /// 60S ribosomal protein L23	-	1e-56	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select
0.42	3e-74	278	Zm.12634.1.A1_at	CF048221	hypothetical protein LOC100194224 /// 60S ribosomal protein L23 /// 60S ribosomal protein L23	-	1e-56	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select
0.38	8e-53	206	Zm.14265.1.A1_at	AY105423.1	hypothetical protein LOC100272919	-	5e-53	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.562.1.A1_at	AF244702.1	glutathione transferase37	-	8e+0	At2g42590	GRF9 (GENERAL REGULATORY FACTOR 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	8e-61	234	Arabidopsis thaliana	At1g04480	839511	60S ribosomal protein L23 (RPL23A)	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOPMAF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.48	2e-56	220	Glycine max	GmaAffx.90040.1.A1_at	CF805864	-	-	2e-88	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select
0.50	3e-145	513	Hordeum vulgare	Contig1909_s_at	Contig1909	-	-	3e-97	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select
0.53	3e-136	486	Oryza sativa	Os02g0814700	AK121994.1	-	60S ribosomal protein L17 [Oryza sativa (japonicacultivar-group)]	4e-78	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.46	4e-88	325	Populus trichocarpa	PtpAffx.993.2.S1_s_at	BU835787	hypothetical protein	-	2e-101	At3g04400	emb2171 (embryo defective 2171)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	8e-129	460	Triticum aestivum	Ta.14635.1.S1_a_at	AF479048.1	ribosomal Pr 117	-	9e-81	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select
0.46	2e-86	317	Vitis vinifera	1607660_at	CA812263	similar to ribosomal protein L17	-	6e-80	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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