CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.12634.3.A1_a_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 76.1 Zm.12634.3.A1_a_at AI891366 - - 4e+0 At4g16830 nuclear RNA-binding protein (RGGA) S.X. H.G.
0.67 85.8 Zm.1322.1.A1_at AI737263 hypothetical protein LOC100279212 - 5e-31 At3g02760 ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding S.X. H.G.
0.55 71.6 Zm.4977.1.S1_at AY109232.1 - - 2e-1 At1g58360 AAP1 (AMINO ACID PERMEASE 1) S.X. H.G.
0.53 69.1 - - - 0 S.X. H.G.
0.50 65.7 Zm.2758.1.A1_at AW067110 - - 2e-6 At2g25730 unknown protein S.X. H.G.
0.48 61.3 Zm.16861.2.S1_at AW498347 L-ascorbate oxidase - 7e-4 At1g55570 sks12 (SKU5 Similar 12) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.4 98.1 GSM205369 Mo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.2 97.8 GSM205373 Mo17 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.5 97.5 GSM205371 Mo17xB73 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.8 97.2 GSM205365 Mo17 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.5 97.1 GSM205375 Mo17xB73 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.5 95.1 GSM205367 Mo17xB73 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.5 95.1 GSM205370 B73 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.0 94.0 GSM258531 Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 1 GSE10243 Profiling expression changes caused by a segmental aneuploid in maize
3.0 94.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8 93.5 GSM206332 Lower pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 918 Zm.12634.3.S1_at AI891366 - - 4e+0 At4g16830 nuclear RNA-binding protein (RGGA) C.G. S.X.
0.09 1e-4 46 Zm.7679.1.A1_at BM079456 hypothetical protein LOC100273504 - 3e-12 At5g19820 emb2734 (embryo defective 2734) C.G. S.X.
0.03 2e+0 32 Zm.2066.1.A1_at CF054966 ubiquitin family protein - 2e+0 At1g12010 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative C.G. S.X.
0.03 7e+0 30 ZmAffx.1209.1.A1_at BG349642 - - 1e+0 At3g49780 ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR) C.G. S.X.
0.03 7e+0 30 ZmAffx.1209.1.S1_at BG349642 - - 1e+0 At3g49780 ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR) C.G. S.X.
0.01 7e+0 30 Zm.7969.1.S1_a_at CA399140 - - 1e-25 At1g55090 carbon-nitrogen hydrolase family protein C.G. S.X.
0.01 7e+0 30 Zm.7969.1.S1_x_at CA399140 - - 1e-25 At1g55090 carbon-nitrogen hydrolase family protein C.G. S.X.
0.03 7e+0 30 Zm.7768.1.A1_s_at BG836144 hypothetical protein LOC100276601 - 4e-3 At5g23950 C2 domain-containing protein C.G. S.X.
0.03 7e+0 30 Zm.7768.1.A1_at BG836144 - - 4e-3 At5g23950 C2 domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e+0 32 Arabidopsis thaliana At4g16830 827389 nuclear RNA-binding protein (RGGA) F:RNA binding;P:biological_process unknown;C:nucleus, cytoplasm;MBPOFVA - - - C.G. S.X.
0.14 1e-10 67 Glycine max GmaAffx.86213.1.S1_at BF066951 - - 5e+0 At5g19820 emb2734 (embryo defective 2734) C.G. S.X.
0.20 1e-38 159 Hordeum vulgare Contig6217_at Contig6217 - - 5e-86 At5g19820 emb2734 (embryo defective 2734) C.G. S.X.
0.19 1e-41 171 Oryza sativa Os07g0575100 9635.m03861 - ARM repeat fold domain containing protein 6e-65 At5g19820 emb2734 (embryo defective 2734) C.G. S.X.
0.13 2e-2 40 Populus trichocarpa PtpAffx.222095.1.S1_s_at pmrna39311 hypothetical protein - 1e-1 At5g07880 SNAP29 C.G. S.X.
0.40 1e-18 93 Triticum aestivum Ta.4732.2.S1_a_at CA635200 - - 1e+0 At3g22275 unknown protein C.G. S.X.
0.11 8e-5 46 Vitis vinifera 1609920_at CD711951 hypothetical protein LOC100264144 - 4e-30 At5g19820 emb2734 (embryo defective 2734) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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