Gene omics information

Query gene ID	Zm.12626.2.A1_a_at
Gene name	craniofacial development protein 1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.12626.2.A1_a_at	BG841446	craniofacial development protein 1	-	3e-1	At1g01640	speckle-type POZ protein-related	S.X.	H.G.	Please select
0.50	65.7	Zm.15615.1.S1_at	CO533411	plant-specific domain TIGR01627 family protein	-	1e+1	At5g15840	CO (CONSTANS)	S.X.	H.G.	Please select
0.44	55.7	Zm.17686.1.A1_at	CF632894	-	-	3e-1	At5g52270	vesicle transport protein-related	S.X.	H.G.	Please select
0.43	52.8	Zm.16207.1.S1_at	AY109575.1	-	-	6e-43	At1g23190	phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative	S.X.	H.G.	Please select
0.29	28.1	Zm.8703.1.A1_at	BM337839	-	-	1e+0	At4g25330	unknown protein	S.X.	H.G.	Please select
0.13	6.8	Zm.12429.1.A1_at	CA403429	conserved protein	-	3e-9	At5g19300	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.1	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.6	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.1	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	6e-173	605	Zm.12626.1.A1_at	BU645250	craniofacial development protein 1	-	2e-10	At5g30490	-	C.G.	S.X.	Please select
0.11	1e-29	129	Zm.18908.1.A1_at	CO531963	-	-	2e-9	At5g30490	-	C.G.	S.X.	Please select
0.17	1e-29	129	Zm.18908.1.S1_at	CO531963	-	-	2e-9	At5g30490	-	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.4116.1.A1_at	CF055002	hypothetical protein LOC100191379	-	6e-1	At5g48680	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.257.1.A1_at	BM332863	proline-rich protein	-	2e-1	At1g29280	WRKY65	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.16959.3.S1_x_at	CA400373	elongation factor 1-gamma 3	-	2e-57	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.16959.1.S1_at	CD441292	hypothetical protein LOC100192872	-	1e-55	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.16959.3.S1_at	CA400373	elongation factor 1-gamma 3	-	2e-57	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.16959.3.S1_a_at	CA400373	hypothetical protein LOC100192872 /// elongation factor 1-gamma 3	-	2e-57	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At1g01640	839534	speckle-type POZ protein-related	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.61161.1.S1_at	CA801478	-	-	3e+0	At4g14272	-	C.G.	S.X.	Please select
0.07	1e-17	89	Hordeum vulgare	Contig10190_at	Contig10190	-	-	3e-15	At5g30490	-	C.G.	S.X.	Please select
0.08	6e-10	65	Oryza sativa	Os01g0328500	AK058517.1	-	Bucentaur or craniofacial development familyprotein	3e-12	At5g30490	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.207733.1.S1_at	pmrna15366	hypothetical protein	-	3e-1	At5g49040	disease resistance-responsive protein-related / dirigent protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	2e-14	79	Triticum aestivum	TaAffx.25214.1.S1_at	CA704526	-	-	4e+0	At5g44560	VPS2.2	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1609309_at	CF568890	-	-	4e-43	At3g48890	ATMP2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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