Gene omics information

Query gene ID	Zm.12577.1.A1_at
Gene name	DNA methyl transferase 106
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.12577.1.A1_at	AF527610.1	DNA methyl transferase 106	-	3e-1	At3g25680	-	S.X.	H.G.	Please select
0.71	88.2	Zm.14438.1.A1_at	CO520860	VAMP-like protein YKT62	-	4e-12	At5g58180	ATYKT62	S.X.	H.G.	Please select
0.67	85.8	Zm.10085.1.A1_at	BM382598	-	-	6e+0	At4g02270	pollen Ole e 1 allergen and extensin family protein	S.X.	H.G.	Please select
0.60	77.8	Zm.16289.1.A1_at	BM337131	hypothetical protein LOC100217119	-	2e-2	At4g12110	SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)	S.X.	H.G.	Please select
0.57	75.1	Zm.8552.1.A1_at	BM347529	hypothetical protein LOC100275365	-	1e+0	At1g35340	ATP-dependent protease La (LON) domain-containing protein	S.X.	H.G.	Please select
0.55	71.6	Zm.13343.1.S1_at	CA832209	Hypothetical protein LOC100192517	-	4e+1	At5g45880	pollen Ole e 1 allergen and extensin family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.5	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-7	57	Zm.18220.1.S1_at	CN845519	hypothetical protein LOC100217249	-	2e-6	At2g23780	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	5e-7	56	Zm.4791.1.A1_at	BM341427	splicing factor 3B subunit 5	-	2e-46	At4g14342	pre-mRNA splicing factor 10 kDa subunit, putative	C.G.	S.X.	Please select
0.01	3e-5	50	Zm.2468.1.S1_at	AW120207	hypothetical protein LOC100191330	-	2e+0	At4g39190	unknown protein	C.G.	S.X.	Please select
0.02	3e-5	50	Zm.14732.1.S1_at	CB250091	hypothetical protein LOC100192107	-	4e-12	At3g22290	unknown protein	C.G.	S.X.	Please select
0.02	3e-5	50	Zm.13837.1.A1_at	AY104223.1	hypothetical protein LOC100193655	-	6e-11	At2g43770	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.01	5e-4	46	Zm.8824.1.A1_at	BM347277	FK506-binding protein 4	-	2e-6	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	C.G.	S.X.	Please select
0.01	5e-4	46	Zm.6311.1.S1_at	CO517486	hypothetical protein LOC100279296	-	2e-1	At5g67490	unknown protein	C.G.	S.X.	Please select
0.01	5e-4	46	Zm.3959.2.A1_at	AY110235.1	integral membrane protein like	-	1e-20	At1g34020	transporter-related	C.G.	S.X.	Please select
0.01	5e-4	46	Zm.3959.2.A1_a_at	AY110235.1	hypothetical protein LOC100193090 /// hypothetical protein LOC100216942 /// integral membrane protein like	-	1e-20	At1g34020	transporter-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	38	Arabidopsis thaliana	At3g25680	822156	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	2e+0	36	Glycine max	GmaAffx.57781.1.S1_at	BM188702	-	-	8e-1	Atmg00770	-	C.G.	S.X.	Please select
0.22	3e-21	103	Hordeum vulgare	Contig11117_at	Contig11117	-	-	3e+0	At5g61865	unknown protein	C.G.	S.X.	Please select
0.25	3e-18	95	Oryza sativa	Os05g0133900	AK063482.1	-	Conserved hypothetical protein	1e+0	At2g17705	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	38	Populus trichocarpa	PtpAffx.209102.1.S1_at	pmrna18006	DNA methyltransferase	-	6e-2	At3g17310	methyltransferase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-8	61	Triticum aestivum	TaAffx.101302.1.S1_at	CA499376	-	-	1e+0	At2g19790	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.06	1e-3	44	Vitis vinifera	1608111_at	CB972142	hypothetical protein LOC100247823	-	1e+0	At1g24240	ribosomal protein L19 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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