Gene omics information

Query gene ID	Zm.12557.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.12557.1.A1_at	AI691470	-	-	3e+0	At3g01450	binding	S.X.	H.G.	Please select
0.39	45.6	Zm.12619.1.A1_at	BM953641	hypothetical protein LOC100193537	-	4e+0	At5g39880	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.15167.1.A1_at	BM074661	-	-	5e+0	At5g39700	MYB89 (myb domain protein 89)	S.X.	H.G.	Please select
0.25	21.3	Zm.12069.2.S1_x_at	AY112265.1	-	-	3e+0	At4g32530	vacuolar ATP synthase, putative / V-ATPase, putative	S.X.	H.G.	Please select
0.21	15.5	ZmAffx.1213.1.S1_at	BU051439	-	-	2e-1	At3g10190	calmodulin, putative	S.X.	H.G.	Please select
0.08	3.4	Zm.11726.1.A1_at	BM380234	-	-	3e-1	At1g31750	proline-rich family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.2	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.3	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.8	99.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.1	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	34	Zm.12426.1.S1_at	AY111182.1	-	-	4e+0	At1g22640	MYB3 (MYB DOMAIN PROTEIN 3)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.18428.1.A1_at	CO523446	hypothetical protein LOC100217259	-	2e+1	At2g10535	LCR29 (Low-molecular-weight cysteine-rich 29)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.16853.1.A1_at	AY103985.1	-	-	2e-18	At5g05920	DHS (DEOXYHYPUSINE SYNTHASE)	C.G.	S.X.	Please select
0.01	6e+0	30	Zm.9963.1.S1_at	AI737691	-	-	4e-68	At5g49910	CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)	C.G.	S.X.	Please select
0.02	6e+0	30	Zm.9615.1.A1_at	BM338182	hypothetical protein LOC100272870	-	5e-1	At3g49820	unknown protein	C.G.	S.X.	Please select
0.01	6e+0	30	Zm.9181.1.A1_at	CA402930	hypothetical protein LOC100192510	-	5e-2	At2g28710	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	6e+0	30	Zm.7472.1.A1_at	BM078895	hypothetical protein LOC100274148	-	2e+0	At4g23690	disease resistance-responsive family protein / dirigent family protein	C.G.	S.X.	Please select
0.01	6e+0	30	Zm.6664.1.S1_at	CO531480	hypothetical protein LOC100192799	-	6e-8	At1g56440	serine/threonine protein phosphatase-related	C.G.	S.X.	Please select
0.02	6e+0	30	Zm.5317.1.A1_at	CA403728	-	-	8e-12	At5g54200	WD-40 repeat family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	32	Arabidopsis thaliana	At3g01450	821140	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	GmaAffx.47491.1.S1_at	CA801949	-	-	9e-1	At3g45990	actin-depolymerizing factor, putative	C.G.	S.X.	Please select
0.03	7e+0	30	Hordeum vulgare	Contig4620_at	Contig4620	-	-	5e+0	At2g40300	ATFER4 (ferritin 4)	C.G.	S.X.	Please select
0.04	1e-1	38	Oryza sativa	OsAffx.27630.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.221155.1.S1_at	pmrna37797	hypothetical protein	-	2e-1	At3g48208	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+1	30	Triticum aestivum	TaAffx.98797.3.S1_at	CA639155	-	-	4e-2	At4g16750	DRE-binding transcription factor, putative	C.G.	S.X.	Please select
0.04	3e-1	34	Vitis vinifera	1614010_at	CF518977	hypothetical LOC100246762	-	4e+0	At1g60390	BURP domain-containing protein / polygalacturonase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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