CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.12534.1.A1_at

Gene name hypothetical protein LOC100192944

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.48 61.3 Zm.12534.1.A1_at CF628471 hypothetical protein LOC100192944 - 5e-5 At5g20520 WAV2 (WAVY GROWTH 2) S.X. H.G.
0.46 58.4 Zm.5851.6.S1_x_at L46399.1 MADS box protein - 2e-8 At4g18960 AG (AGAMOUS) S.X. H.G.
0.29 28.1 Zm.7755.1.A1_at CN845074 hypothetical protein LOC100275494 - 3e-18 At1g16460 ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2) S.X. H.G.
0.20 14.2 Zm.18394.1.A1_at CO534001 ATP-dependent Clp protease ATP-binding subunit clpX - 1e-27 At5g53350 CLPX S.X. H.G.
0.07 2.9 Zm.4664.3.S1_x_at AY108266.1 - - 4e+0 At5g65070 MAF4 (MADS AFFECTING FLOWERING 4) S.X. H.G.
0.06 2.3 Zm.13132.1.S1_at AY107386.1 hypothetical protein LOC100274327 - 2e-7 At1g55900 TIM50 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.6 96.4 GSM290554 WS2 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
4.6 96.4 GSM290555 CCR mutant M1 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.9 95.7 GSM290553 WS1 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.8 95.5 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis
3.5 95.1 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
3.4 94.9 GSM253281 ZM_8d_SG200_3Alu_II GSE10023 Maize gene expression during infection with Ustilago maydis
3.1 94.3 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9 93.8 GSM375788 Deep-sowing 10d treatment Control, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
2.8 93.5 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8 93.5 GSM375796 Deep-sowing 10d treatment GA3, biological rep2 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 34 Zm.9806.1.S1_at BM339423 hypothetical protein LOC100278385 - 2e-2 At2g47180 AtGolS1 (Arabidopsis thaliana galactinol synthase 1) C.G. S.X.
0.01 1e+0 34 Zm.9418.1.S1_at AF493799.1 DREB-like protein - 4e-2 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) C.G. S.X.
0.01 1e+0 34 Zm.4985.1.A1_at CO533545 ubiquitin-conjugating enzyme E2-17 kDa - 2e-25 At2g02760 ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) C.G. S.X.
0.01 1e+0 34 Zm.18024.1.S1_at AY530730.1 thylakoid assembly8 - 3e-2 At1g54215 proline-rich family protein C.G. S.X.
0.01 1e+0 34 Zm.14591.2.S1_at CK370886 - - 2e-7 At3g55440 TPI (TRIOSEPHOSPHATE ISOMERASE) C.G. S.X.
0.01 5e+0 32 Zm.8507.1.A1_at BM074458 hypothetical protein LOC100276220 - 8e-1 At4g20280 TAF11 (TBP-ASSOCIATED FACTOR 11) C.G. S.X.
0.01 5e+0 32 Zm.16024.2.S1_x_at CF024642 40S ribosomal protein S24 - 9e-24 At3g04920 40S ribosomal protein S24 (RPS24A) C.G. S.X.
0.01 5e+0 32 Zm.16024.1.S1_at AF298769.1 40S ribosomal protein S24 - 1e-26 At3g04920 40S ribosomal protein S24 (RPS24A) C.G. S.X.
0.01 5e+0 32 Zm.16024.1.S1_a_at AF298769.1 40S ribosomal protein S24 - 1e-26 At3g04920 40S ribosomal protein S24 (RPS24A) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 5e-5 50 Arabidopsis thaliana At5g20520 832174 WAV2 (WAVY GROWTH 2) Encodes a Bem46-like protein. WAV2 negatively regulates root bending when roots alter their growth direction. It's not involved in sensing environmental stimuli (e.g. gravity, light, water, touch). - - - C.G. S.X.
0.09 1e-3 46 Glycine max Gma.13971.1.S1_at CD412065 - - 8e-22 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.56 0 934 Hordeum vulgare Contig982_at Contig982 - - 2e-1 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.54 0 888 Oryza sativa Os07g0608300 AK073927.1 - Esterase/lipase/thioesterase domain containingprotein 1e-2 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.10 2e-5 52 Populus trichocarpa PtpAffx.74614.3.S1_at CV270110 - - 2e-64 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.41 1e-98 361 Triticum aestivum Ta.15729.1.S1_at CA486567 - - 8e-1 At3g53610 ATRAB8 C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1615417_at CB348753 - - 1e+0 At2g45240 MAP1A (METHIONINE AMINOPEPTIDASE 1A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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