Gene omics information

Query gene ID	Zm.12526.1.A1_x_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.12526.1.A1_x_at	AI734393	-	-	3e+0	At1g58150	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.15.1.A1_at	AY271262.1	NADP malic enzyme3	-	3e-16	At1g79750	ATNADP-ME4 (NADP-malic enzyme 4)	S.X.	H.G.	Please select
0.53	69.1	Zm.9952.1.A1_at	BM349898	-	-	6e+0	At5g46115	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.17712.1.S1_at	CK370052	hypothetical protein LOC100275406	-	8e-20	At5g19855	unknown protein	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.954.1.S1_at	AI833471	-	-	3e+0	At1g26480	GRF12 (GENERAL REGULATORY FACTOR 12)	S.X.	H.G.	Please select
0.33	36.0	ZmAffx.917.1.S1_at	AI782944	-	-	1e+1	At5g26810	pectinesterase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.5	99.3	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.2	99.3	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0	99.3	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.9	99.3	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0	99.1	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	732	Zm.12526.1.S1_at	AI734393	-	-	3e+0	At1g58150	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	34	ZmAffx.462.1.A1_at	AI677305	-	-	3e+0	At4g22870	leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative	C.G.	S.X.	Please select
0.04	3e-1	34	ZmAffx.462.1.S1_at	AI677305	-	-	3e+0	At4g22870	leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.19176.1.S1_at	CO528309	-	-	3e-18	At5g51700	PBS2 (PPHB SUSCEPTIBLE 2)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.18461.1.A1_at	CO523653	-	-	2e-8	At5g56750	Ndr family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.10579.1.S1_at	CD433174	hypothetical protein LOC100277251	-	3e+0	At3g25080	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.10317.1.S1_at	AF370003.1	pyruvate decarboxylase	-	6e-33	At5g54960	PDC2 (pyruvate decarboxylase-2)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.9782.1.A1_at	BM338767	hypothetical protein LOC100278462	-	5e+0	At4g20150	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.6804.1.A1_at	CA403463	hypothetical protein LOC100280289	-	2e-66	At2g34250	protein transport protein sec61, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e+0	32	Arabidopsis thaliana	At1g58150	842182	unknown protein	F:molecular_function unknown;P:in 9 processes;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	3e-1	36	Glycine max	PsAffx.psHB035xN14f_at	PsAffx.psHB035xN14f	-	-	1e+1	At5g51110	4-alpha-hydroxytetrahydrobiopterin dehydratase	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig13611_at	Contig13611	-	-	1e+0	Atmg00920	-	C.G.	S.X.	Please select
0.03	4e-1	36	Oryza sativa	Os06g0602600	AK121619.1	-	-	2e-28	At2g34160	nucleic acid binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.218654.1.S1_at	pmrna34349	hypothetical protein	-	1e+1	At3g62990	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-1	34	Triticum aestivum	Ta.28801.1.A1_a_at	BM138374	-	-	7e-3	At4g29350	PFN2 (PROFILIN 2)	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1618996_at	CD801234	hypothetical protein LOC100241601	-	8e-17	At5g41560	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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