Gene omics information

Query gene ID	Zm.12525.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.12525.1.A1_at	BG266189	-	-	3e+0	At3g54550	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.2143.1.A1_at	BE552530	-	-	1e-7	At5g09860	nuclear matrix protein-related	S.X.	H.G.	Please select
0.67	85.8	Zm.12286.1.A1_at	BM379131	hypothetical protein LOC100276985	-	2e+0	At2g15440	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.2960.1.S1_at	CF005604	EMB1688	-	3e-13	At1g67440	emb1688 (embryo defective 1688)	S.X.	H.G.	Please select
0.20	14.2	Zm.15516.1.S1_at	CK787189	hypothetical protein LOC100279678	-	2e+0	At1g60140	ATTPS10 (trehalose phosphate synthase)	S.X.	H.G.	Please select
0.17	10.6	Zm.3116.1.S1_at	CO534304	-	-	2e-17	At5g47540	binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
44.0	100.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
42.8	99.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
41.6	99.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
40.2	99.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
36.9	99.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.2	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	9e-5	46	Zm.6276.1.A1_at	AW191102	-	-	1e+0	At4g23882	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.6367.1.S1_at	BM259420	-	-	3e-1	At4g26200	ACS7	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.4746.1.A1_at	BG266536	-	-	3e-3	At1g58030	CAT2 (CATIONIC AMINO ACID TRANSPORTER 2)	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.4057.1.A1_at	AI734450	-	-	1e-5	At1g31880	BRX (BREVIS RADIX)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.7649.1.A1_at	CF044168	RNA-binding post-transcriptional regulator csx1	-	4e-15	At5g19350	RNA-binding protein 45 (RBP45), putative	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.5292.1.A1_a_at	BM074771	-	-	2e-7	At5g23750	remorin family protein	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.337.1.S1_at	AI670524	-	-	3e+1	At3g24510	-	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.337.1.A1_at	AI670524	-	-	3e+1	At3g24510	-	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.9546.1.A1_at	AY105569.1	hypothetical protein LOC100276154	-	2e+0	At5g65080	MAF5 (MADS AFFECTING FLOWERING 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At3g54550	824620	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	Gma.5893.1.S1_at	BQ610229	-	-	2e+0	At4g02370	unknown protein	C.G.	S.X.	Please select
0.09	6e-3	40	Hordeum vulgare	Contig15744_at	Contig15744	-	-	2e-15	At5g19420	Ran GTPase binding / chromatin binding / zinc ion binding	C.G.	S.X.	Please select
0.12	3e-17	89	Oryza sativa	Os02g0684900	AK106462.1	-	The start codon is not identified.	2e-1	At1g72720	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	Ptp.7870.1.A1_s_at	CV269967	hypothetical protein	-	4e+0	At5g02580	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+1	30	Triticum aestivum	TaAffx.111509.1.S1_at	CA638956	-	-	1e+1	At4g23240	protein kinase family protein	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1607091_at	CB970875	hypothetical protein LOC100262262	-	1e-15	At2g36910	ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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