Gene omics information

Query gene ID	Zm.12522.1.A1_at
Gene name	hypothetical protein LOC100279636
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.12522.1.A1_at	AW018145	hypothetical protein LOC100279636	-	6e-1	At5g53190	nodulin MtN3 family protein	S.X.	H.G.	Please select
0.42	51.3		-	-	-	0			S.X.	H.G.	Please select
0.39	45.6	Zm.6083.2.A1_a_at	AF457979.1	hypothetical protein LOC100216609	-	1e-33	At5g23250	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	S.X.	H.G.	Please select
0.37	42.3	Zm.17332.1.A1_at	CK369960	-	-	4e+0	At2g29590	thioesterase family protein	S.X.	H.G.	Please select
0.37	42.3	ZmAffx.525.1.S1_at	AI711680	-	-	8e-1	At5g23170	protein kinase family protein	S.X.	H.G.	Please select
0.36	41.3	Zm.15222.1.A1_a_at	BM347513	-	-	4e+0	At2g38750	ANNAT4 (ANNEXIN ARABIDOPSIS 4)	S.X.	H.G.	Please select
0.35	38.9	Zm.9933.1.A1_at	BM349388	-	-	2e-5	At2g19160	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.3169.5.S1_a_at	AI739763	hypothetical protein LOC100279753 /// minichromosome maintenance protein	-	1e-1	At5g44635	minichromosome maintenance family protein / MCM family protein	S.X.	H.G.	Please select
0.33	36.0	ZmAffx.1206.1.S1_at	BE130052	-	-	2e+0	At2g33370	60S ribosomal protein L23 (RPL23B)	S.X.	H.G.	Please select
0.32	33.4	ZmAffx.98.1.S1_at	AI665458	hypothetical protein LOC100273144	-	1e+1	At2g36026	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.4	98.7	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
12.3	98.7	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
11.0	98.5	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
10.6	98.4	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
7.4	97.8	GSM375795	Deep-sowing 10d treatment Control, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
7.1	97.7	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
6.8	97.6	GSM385708	Deep-sowing 10d treatment IAA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
6.1	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-6	52	Zm.1482.3.A1_at	AY105872.1	hypothetical protein LOC100273779	-	4e-5	At5g50790	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.03	3e-4	46	Zm.10819.1.S1_at	AI812223	hypothetical protein LOC100273706	-	1e-5	At5g62850	AtVEX1 (VEGETATIVE CELL EXPRESSED1)	C.G.	S.X.	Please select
0.03	1e-3	44	Zm.4672.1.S1_at	CF035272	hypothetical protein LOC100276360	-	2e-1	At5g62850	AtVEX1 (VEGETATIVE CELL EXPRESSED1)	C.G.	S.X.	Please select
0.04	2e-2	40	Zm.8559.1.A1_at	BM267276	-	-	6e+0	At3g54110	PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1)	C.G.	S.X.	Please select
0.04	6e-2	38	Zm.9995.1.A1_at	CK787244	-	-	3e-3	At5g62850	AtVEX1 (VEGETATIVE CELL EXPRESSED1)	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.8944.1.S1_at	CO520184	stem-specific protein TSJT1	-	6e-1	At5g19140	AILP1	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.2840.1.A1_at	BM080758	hypothetical protein LOC100275818	-	6e-1	At5g50790	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.17949.1.A1_at	CF627845	-	-	2e-2	At5g13170	SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)	C.G.	S.X.	Please select
0.01	6e-2	38	Zm.13464.1.S1_at	AY109100.1	-	-	3e+0	At4g12350	MYB42 (myb domain protein 42)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At5g53190	835400	nodulin MtN3 family protein	F:unknown;P:biological_process unknown;C:integral to membrane, membrane;PMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	8e-1	36	Glycine max	PsAffx.psML011xG13f_s_at	PsAffx.psML011xG13f	-	-	3e+0	At5g33390	glycine-rich protein	C.G.	S.X.	Please select
0.23	2e-5	50	Hordeum vulgare	rbags1d02_at	rbags1d02	-	-	2e-2	At3g28007	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.41	3e-78	293	Oryza sativa	Os01g0541800	AK066226.1	-	MtN3 and saliva related transmembrane proteinfamily protein	3e+0	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-2	42	Populus trichocarpa	PtpAffx.4645.2.S1_at	BU875549	hypothetical protein	-	4e-5	At3g14770	nodulin MtN3 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	3e-46	186	Triticum aestivum	Ta.15797.1.S1_at	CA486975	-	-	1e+0	At4g27530	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	30	Vitis vinifera	1620272_at	BQ797367	hypothetical protein LOC100252883	-	2e+0	At2g37330	ALS3 (ALUMINUM SENSITIVE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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