Gene omics information

Query gene ID	Zm.12511.1.S1_at
Gene name	hypothetical protein LOC100276976
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.12511.1.S1_at	AW062063	hypothetical protein LOC100276976	-	5e+0	At5g53110	-	S.X.	H.G.	Please select
0.57	75.1	Zm.678.1.S1_at	AF302187.1	sucrose export defective1	-	4e-15	At4g32770	VTE1 (VITAMIN E DEFICIENT 1)	S.X.	H.G.	Please select
0.53	69.1	Zm.12977.2.S1_at	AI677017	Hypothetical protein LOC100193319	-	5e-5	At1g15370	-	S.X.	H.G.	Please select
0.43	52.8	Zm.12936.1.A1_at	AY108987.1	-	-	7e-1	At3g21338	unknown protein	S.X.	H.G.	Please select
0.42	51.3	Zm.2986.1.A1_at	AF056326.1	low phytic acid1	-	4e-105	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	S.X.	H.G.	Please select
0.40	48.5	Zm.17605.1.S1_at	CK368440	-	-	4e-1	At1g03457	RNA-binding protein, putative	S.X.	H.G.	Please select
0.35	38.9	Zm.15790.1.S1_at	AY109814.1	SWIb domain-containing protein	-	1e-1	At4g26810	SWIB complex BAF60b domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
50.0	100.0	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
28.8	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.6	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-3	40	Zm.3885.1.S1_at	CK145224	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	C.G.	S.X.	Please select
0.03	9e-3	40	Zm.12657.1.A1_at	CA826570	-	-	1e-1	At1g11580	PMEPCRA (METHYLESTERASE PCR A)	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.9327.1.A1_at	BM349135	-	-	2e-10	At3g16630	KINESIN-13A	C.G.	S.X.	Please select
0.01	3e-2	38	Zm.13265.1.A1_at	AY110086.1	-	-	1e-3	At1g12240	ATBETAFRUCT4	C.G.	S.X.	Please select
0.01	3e-2	38	Zm.13265.1.S1_at	AY110086.1	-	-	1e-3	At1g12240	ATBETAFRUCT4	C.G.	S.X.	Please select
0.01	3e-2	38	Zm.11759.1.S1_at	AY372244.1	cellulose synthase10	-	3e-8	At5g17420	IRX3 (IRREGULAR XYLEM 3)	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.10181.1.A1_at	BM380185	-	-	5e+0	At4g16750	DRE-binding transcription factor, putative	C.G.	S.X.	Please select
0.03	1e-1	36	ZmAffx.882.1.A1_at	AI770805	-	-	3e+0	At1g18970	GLP4 (GERMIN-LIKE PROTEIN 4)	C.G.	S.X.	Please select
0.03	1e-1	36	ZmAffx.882.1.S1_at	AI770805	-	-	3e+0	At1g18970	GLP4 (GERMIN-LIKE PROTEIN 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At5g53110	835391	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	PsAffx.CL1394Contig1_s_at	PsAffx.CL1394Contig1	-	-	9e-1	At1g05420	OFP12 (OVATE FAMILY PROTEIN 12)	C.G.	S.X.	Please select
0.05	2e-1	36	Hordeum vulgare	Contig10719_at	Contig10719	-	-	4e-1	At5g45580	transcription factor	C.G.	S.X.	Please select
0.31	7e-16	85	Oryza sativa	Os08g0360700	9636.m02689	-	Conserved hypothetical protein	2e-2	At5g12390	FIS1B (FISSION 1B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e-1	36	Populus trichocarpa	PtpAffx.219195.1.S1_at	pmrna35047	hypothetical protein	-	1e+0	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	6e-9	61	Triticum aestivum	TaAffx.9482.1.S1_at	CA597312	-	-	7e-2	At5g40250	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1622474_at	CF373640	-	-	3e+0	At1g54445	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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