Gene omics information

Query gene ID	Zm.1248.1.A1_at
Gene name	hypothetical protein LOC100274169
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.1248.1.A1_at	CF649214	hypothetical protein LOC100274169	-	1e+0	At3g16240	DELTA-TIP	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.314.1.A1_at	AI670496	-	-	3e+0	At3g45960	ATEXLA3 (arabidopsis thaliana expansin-like a3)	S.X.	H.G.	Please select
0.42	51.3	RPTR-Zm-U89963-1_x_at	RPTR-Zm-U89963-1	-	-	0			S.X.	H.G.	Please select
0.39	45.6	ZmAffx.715.1.S1_at	AI739762	-	-	2e-1	At1g04670	unknown protein	S.X.	H.G.	Please select
0.38	44.2	Zm.13447.1.S1_at	CK786856	chaperone protein dnaJ 10	-	2e-11	At1g21080	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.38	44.2	Zm.10252.1.A1_at	AY108029.1	hypothetical protein LOC100279693	-	2e+0	At5g02750	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.37	42.3	Zm.622.1.S1_at	AF342809.1	tonoplast membrane integral protein ZmTIP3-2	-	4e-2	At2g01340	unknown protein	S.X.	H.G.	Please select
0.36	41.3	ZmAffx.96.1.S1_at	AI665410	-	-	1e+1	At4g39130	dehydrin family protein	S.X.	H.G.	Please select
0.36	41.3	ZmAffx.33.1.A1_at	AI657429	t-snare	-	2e-1	At4g00890	proline-rich family protein	S.X.	H.G.	Please select
0.35	38.9	Zm.5976.2.S1_x_at	BG265782	-	-	3e+0	At5g40080	60S ribosomal protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.4	99.7	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
20.7	99.4	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
20.4	99.3	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
16.6	99.1	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.2	98.5	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.5	97.8	GSM206302	Upper pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.7	97.6	GSM206291	Upper pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.1	97.4	GSM206292	Upper pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.0	97.3	GSM206297	Lower pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.5	97.1	GSM206299	Left pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Zm.584.3.S1_a_at	M73029.1	pericarp color1	-	3e-8	At4g38620	MYB4	C.G.	S.X.	Please select
0.03	6e-1	34	ZmAffx.174.1.A1_at	AI668269	SAUR12 - auxin-responsive SAUR family member	-	3e+0	At5g59060	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	34	ZmAffx.174.1.S1_at	AI668269	-	-	3e+0	At5g59060	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.501.1.S1_at	U43034.2	permease 1	-	3e-1	At1g65550	xanthine/uracil permease family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.4435.1.A1_at	AI691606	hypothetical protein LOC100278906	-	3e-2	At4g17900	zinc-binding family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9977.1.S1_at	AY108587.1	hypothetical protein LOC100272895	-	8e+0	At4g03520	ATHM2	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.8745.1.A1_at	BM075447	hypothetical protein LOC100275056	-	4e+0	At3g61860	RSP31	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.8796.1.A1_at	BG841012	-	-	2e+0	At2g28910	CXIP4 (CAX INTERACTING PROTEIN 4)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.8653.1.A1_at	BM075070	hypothetical protein LOC100276878	-	5e+0	At2g31335	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At3g16240	820870	DELTA-TIP	Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by ammonium (NH3). Protein localized to vacuolar membrane.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.psHB013xD09f_s_at	PsAffx.psHB013xD09f	-	-	2e+1	At5g42060	unknown protein	C.G.	S.X.	Please select
0.16	5e-11	67	Hordeum vulgare	Contig16618_at	Contig16618	-	-	2e+0	At5g66000	unknown protein	C.G.	S.X.	Please select
0.19	8e-13	75	Oryza sativa	Os01g0202500	BM418675	-	Zn-finger, CONSTANS type domain containing protein	8e-4	At2g35640	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.88743.1.A1_at	DN487892	-	-	4e-1	At4g02870	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	2e-12	73	Triticum aestivum	TaAffx.69982.1.A1_at	AJ612427	-	-	5e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1613572_at	CB004437	-	-	1e+0	At1g32460	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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