Gene omics information

Query gene ID	Zm.12475.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.12475.1.S1_at	AW600588	-	-	8e-1	At3g54940	-	S.X.	H.G.	Please select
0.36	41.3	Zm.15296.1.S1_at	BQ538198	hypothetical protein LOC100279215	-	2e-1	At1g06590	unknown protein	S.X.	H.G.	Please select
0.35	38.9	ZmAffx.489.1.A1_at	AI691446	Hypothetical protein LOC100216860	-	3e+0	At2g07340	prefoldin-related KE2 family protein	S.X.	H.G.	Please select
0.33	36.0	ZmAffx.737.1.A1_at	AI740079	ras-related protein Rab11C /// ras-related protein Rab11C	-	8e-1	At5g53590	auxin-responsive family protein	S.X.	H.G.	Please select
0.32	33.4	Zm.12542.1.A1_at	AI621486	-	-	1e+0	At1g09810	ECT11 (evolutionarily conserved C-terminal region 11)	S.X.	H.G.	Please select
0.29	28.1	RPTR-Zm-AB076373-1_at	RPTR-Zm-AB076373-1	-	-	0			S.X.	H.G.	Please select
0.29	28.1	ZmAffx.560.1.A1_at	AI714580	-	-	5e-1	At1g21480	exostosin family protein	S.X.	H.G.	Please select
0.27	24.6	ZmAffx.1128.1.S1_at	AW330583	-	-	8e-7	At4g24800	MA3 domain-containing protein	S.X.	H.G.	Please select
0.24	19.8	Zm.4311.1.S1_at	AY105462.1	-	-	1e-31	At1g29880	glycyl-tRNA synthetase / glycine--tRNA ligase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
82.7	100.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
40.2	99.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
38.4	99.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	4e-10	65	Zm.456.1.S1_at	AF019145.2	maize insect resistance1	-	5e-2	At4g11320	cysteine proteinase, putative	C.G.	S.X.	Please select
0.11	4e-10	65	Zm.2276.1.S1_at	CO531514	thiol protease SEN102	-	3e+0	At1g61730	DNA-binding storekeeper protein-related	C.G.	S.X.	Please select
0.03	2e-9	63	Zm.14983.2.A1_at	AY109416.1	-	-	3e-5	At5g27150	NHX1 (NA+/H+ EXCHANGER)	C.G.	S.X.	Please select
0.02	2e-9	63	Zm.14983.2.S1_at	CO524096	-	-	5e-10	At3g05030	NHX2 (SODIUM HYDROGEN EXCHANGER 2)	C.G.	S.X.	Please select
0.07	4e-7	56	Zm.7736.1.S1_at	AF019146.1	maize insect resistance2	-	4e-3	At2g34080	cysteine proteinase, putative	C.G.	S.X.	Please select
0.08	6e-6	52	Zm.9879.2.S1_at	CA404875	vignain	-	5e-5	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	C.G.	S.X.	Please select
0.05	6e-6	52	Zm.3701.1.S1_at	CF636730	cysteine protease 1	-	1e-2	At5g43060	cysteine proteinase, putative / thiol protease, putative	C.G.	S.X.	Please select
0.01	9e-5	48	Zm.5987.1.A2_at	AF019147.1	cysteine protease component of protease-inhibitor complex	-	7e-14	At5g43060	cysteine proteinase, putative / thiol protease, putative	C.G.	S.X.	Please select
0.01	9e-5	48	Zm.5987.1.A2_a_at	AF019147.1	cysteine protease 1 /// cysteine protease 1 /// cysteine proteinase Mir3	-	7e-14	At5g43060	cysteine proteinase, putative / thiol protease, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-1	36	Arabidopsis thaliana	At3g54940	824659	-	-	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-3	44	Glycine max	PsAffx.CL90Contig1_at	PsAffx.CL90Contig1	-	-	4e-3	At4g16190	cysteine proteinase, putative	C.G.	S.X.	Please select
0.15	2e-24	113	Hordeum vulgare	HM07A13r_at	HM07A13r	-	-	4e+0	At3g10525	-	C.G.	S.X.	Please select
0.19	1e-19	99	Oryza sativa	Os09g0381400	AK121482.1	-	Peptidase C1A, papain family protein	9e-1	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	7e-2	40	Populus trichocarpa	Ptp.6952.1.S1_at	CA932255	hypothetical protein	-	9e-5	At1g18210	calcium-binding protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	3e-25	117	Triticum aestivum	Ta.4313.1.S1_at	BJ263492	-	-	1e+1	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select
0.03	9e-1	34	Vitis vinifera	1621182_at	CD717861	hypothetical protein LOC100259532	-	1e-3	At3g48590	NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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