CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.1247.1.S1_at

Gene name EARLY flowering 4 protein

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 71.6 Zm.1247.1.S1_at BE575051 EARLY flowering 4 protein - 4e+0 At3g17570 F-box family protein S.X. H.G.
0.59 76.1 Zm.361.1.A1_at AB060130.1 response regulator 8 - 5e-3 At3g16857 ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1) S.X. H.G.
0.50 65.7 Zm.3610.1.A1_at AW065778 hypothetical protein LOC100276901 - 2e+0 At4g04360 unknown protein S.X. H.G.
0.47 59.9 Zm.3608.1.A1_at BG842128 protein lap1 - 6e-4 At3g11330 leucine-rich repeat family protein S.X. H.G.
0.46 58.4 ZmAffx.982.4.S1_at AW787457 - - 3e+0 At4g17615 CBL1 (CALCINEURIN B-LIKE PROTEIN 1) S.X. H.G.
0.44 55.7 Zm.15242.1.A1_at BM340075 - - 1e+1 At3g16712 unknown protein S.X. H.G.
0.38 44.2 Zm.8311.2.A1_a_at BM073622 - - 4e+0 At4g23090 unknown protein S.X. H.G.
0.37 42.3 Zm.7054.1.S1_at BM331766 actin-depolymerizing factor 6 - 6e-4 At5g59890 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) S.X. H.G.
0.32 33.4 Zm.14302.1.A1_at BG841920 proteasome subunit alpha type 3 - 9e-28 At2g27020 PAG1 S.X. H.G.
0.31 31.6 Zm.19002.1.A1_at CO525625 hypothetical protein LOC100279879 - 7e+0 At5g35290 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.1 98.0 GSM206302 Upper pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.4 97.8 GSM206309 Lower pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.2 97.8 GSM206303 Upper pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.1 97.7 GSM206308 Lower pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.8 97.6 GSM320443 protocol: mRNA - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7 97.6 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
5.2 96.9 GSM206304 Upper pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.8 95.5 GSM206291 Upper pulvinus 30 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.7 95.4 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
3.7 95.4 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 9e-27 119 Zm.7760.1.A1_s_at BM080238 hypothetical protein LOC100279754 /// early flowering 4 - 1e+0 At5g16030 unknown protein C.G. S.X.
0.13 6e-25 113 Zm.12050.1.A1_at BM416823 early flowering 4 - 1e+0 At5g16030 unknown protein C.G. S.X.
0.07 1e-4 46 Zm.6054.1.A1_at AW497492 - - 3e+0 At5g25490 zinc finger (Ran-binding) family protein C.G. S.X.
0.02 3e-2 38 Zm.4410.1.S1_at AI714715 hypothetical protein LOC100276528 - 7e-1 At2g36026 - C.G. S.X.
0.04 3e-2 38 Zm.11683.1.A1_at BM379917 - - 4e+0 At3g45673 unknown protein C.G. S.X.
0.02 1e-1 36 Zm.2955.1.S1_at BQ539563 - - 2e+0 At5g63500 unknown protein C.G. S.X.
0.02 1e-1 36 Zm.19067.1.S1_at AY107493.1 hypothetical protein LOC100279588 - 3e+0 At5g20810 auxin-responsive protein, putative / small auxin up RNA (SAUR_B) C.G. S.X.
0.03 1e-1 36 Zm.17184.1.A1_at CK985542 hypothetical protein LOC100275893 - 6e+0 At4g09984 LCR34 (Low-molecular-weight cysteine-rich 34) C.G. S.X.
0.02 1e-1 36 Zm.16973.1.S1_at CD219246 VQ motif family protein - 1e-8 At3g22160 VQ motif-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 32 Arabidopsis thaliana At3g17570 821023 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO - - - C.G. S.X.
0.04 9e-2 38 Glycine max GmaAffx.88548.1.S1_at CA799128 - - 3e+0 At4g30050 unknown protein C.G. S.X.
0.12 8e-12 69 Hordeum vulgare Contig11576_at Contig11576 - - 4e-1 At3g58150 - C.G. S.X.
0.14 5e-44 178 Oryza sativa Os03g0410300 AK071843.1 - Protein of unknown function DUF1313 family protein 1e-4 At1g72630 ELF4-L2 (ELF4-Like 2) C.G. S.X.
0.05 1e+0 34 Populus trichocarpa PtpAffx.13714.1.A1_at CK095001 - - 2e+0 At4g33690 unknown protein C.G. S.X.
0.13 2e-8 59 Triticum aestivum Ta.4324.3.A1_x_at CA723443 - - 4e+0 At5g48860 unknown protein C.G. S.X.
0.08 1e-6 52 Vitis vinifera 1618652_at CF208532 hypothetical protein LOC100266924 - 2e-9 At2g06255 ELF4-L3 (ELF4-Like 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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