Gene omics information

Query gene ID	Zm.12391.1.S1_at
Gene name	endochitinase PR4
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.81	94.3	Zm.12391.1.S1_at	CF349132	endochitinase PR4	-	1e-1	At3g54420	ATEP3	S.X.	H.G.	Please select
0.79	92.8	Zm.4669.1.S1_at	AI737897	Growth-regulating factor 9-like	-	5e-5	At3g52910	AtGRF4 (GROWTH-REGULATING FACTOR 4)	S.X.	H.G.	Please select
0.65	82.1	Zm.3379.1.A1_at	BM075631	hypothetical protein LOC100272941	-	1e+0	At3g59250	F-box family protein	S.X.	H.G.	Please select
0.62	79.8	Zm.10756.1.S1_at	CD975109	-	-	2e+0	At1g58460	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.7146.1.A1_at	CF003899	30S ribosomal protein S17 /// hypothetical protein LOC100276656	-	3e-20	At1g79850	RPS17 (RIBOSOMAL PROTEIN S17)	S.X.	H.G.	Please select
0.55	71.6	Zm.1076.1.S1_at	AY103995.1	photosystem II subunit29	-	3e-27	At3g08940	LHCB4.2 (light harvesting complex PSII)	S.X.	H.G.	Please select
0.49	61.9	Zm.19179.1.S1_at	CO530465	hypothetical protein LOC100217065 /// 4Fe-4S ferredoxin, iron-sulfur binding protein	-	3e+0	At3g51690	-	S.X.	H.G.	Please select
0.47	59.9	Zm.14352.3.S1_at	CD448920	-	-	3e+0	At3g43420	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.5723.1.A1_at	BM079835	fiber protein Fb2	-	9e-3	At4g33740	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.3044.2.A1_at	AI881563	-	-	8e-1	At1g59835	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.8	99.6	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.6	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	5e-30	131	Zm.1595.1.S1_at	CD967190	endochitinase A	-	6e-1	At3g54420	ATEP3	C.G.	S.X.	Please select
0.10	6e-5	48	Zm.11654.1.A1_at	CK347373	hypothetical protein LOC100280135	-	1e-5	At3g54420	ATEP3	C.G.	S.X.	Please select
0.11	1e-2	40	Zm.847.1.S1_at	L00973.1	hypothetical protein LOC100274400	-	1e-1	At1g02360	chitinase, putative	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.17918.1.A1_at	CK985445	ras-related protein ARA-3	-	7e-22	At3g09900	ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E)	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.1381.1.S1_at	S44171.1	male-gametophyte specific1	-	2e+0	At4g29350	PFN2 (PROFILIN 2)	C.G.	S.X.	Please select
0.04	1e-2	40	Zm.11834.1.S1_at	BM381120	hypothetical protein LOC100191186	-	4e-1	At1g06475	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.9754.1.A1_at	AJ606942.1	cytokinin oxidase 2	-	8e-11	At3g63440	CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.16971.1.A1_s_at	AJ606944.1	cytokinin oxidase 2 /// cytokinin oxidase 3	-	8e-11	At3g63440	CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.16971.1.A1_at	AJ606944.1	cytokinin oxidase 3	-	8e-11	At3g63440	CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-1	38	Arabidopsis thaliana	At3g54420	824608	ATEP3	encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e-2	42	Glycine max	PsAffx.C2000283_at	PsAffx.C2000283	-	-	1e+0	At3g27590	unknown protein	C.G.	S.X.	Please select
0.55	3e-112	404	Hordeum vulgare	Contig14498_at	Contig14498	-	-	9e-3	At2g43590	chitinase, putative	C.G.	S.X.	Please select
0.58	8e-125	448	Oryza sativa	Os02g0605900	AK064754.1	-	Chitinase (EC 3.2.1.14) A	5e-1	At3g54420	ATEP3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.215930.1.S1_at	pmrna30405	hypothetical protein	-	1e+0	At3g54770	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	5e-20	99	Triticum aestivum	Ta.2278.2.S1_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	C.G.	S.X.	Please select
0.05	7e-7	54	Vitis vinifera	1606625_at	CF603972	hypothetical protein LOC100257850	-	1e-1	At2g43590	chitinase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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