Gene omics information

Query gene ID	Zm.12384.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.12384.1.A1_at	AY111304.1	-	-	5e-4	At3g23340	ckl10 (Casein Kinase I-like 10)	S.X.	H.G.	Please select
0.67	85.8	Zm.8774.1.A1_at	BM075843	-	-	5e+0	At5g20100	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.13919.1.A1_at	AF057523.1	hypoxically induced transcript 3	-	5e+0	At5g04210	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.61	79.5	Zm.13919.1.S1_at	AF057523.1	hypoxically induced transcript 3	-	5e+0	At5g04210	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.47	59.9	Zm.8097.1.A1_at	BM336868	-	-	2e+0	At3g21940	receptor protein kinase-related	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.296.1.S1_at	AI670429	-	-	8e-1	At2g37950	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.5	99.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
36.7	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
35.6	99.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.7	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.1	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.75	0	1459	Zm.12384.1.S1_at	CK370080	-	-	5e-4	At3g23340	ckl10 (Casein Kinase I-like 10)	C.G.	S.X.	Please select
0.14	5e-24	111	Zm.2307.1.S1_at	AY104400.1	hypothetical protein LOC100279946	-	1e-17	At4g26100	CK1 (CASEIN KINASE 1)	C.G.	S.X.	Please select
0.12	2e-17	89	Zm.3824.1.S1_at	AW424570	-	-	2e-35	At3g23340	ckl10 (Casein Kinase I-like 10)	C.G.	S.X.	Please select
0.04	2e-8	59	Zm.14358.1.A1_at	CA402172	hypothetical protein LOC100217181	-	2e-10	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	C.G.	S.X.	Please select
0.04	6e-8	57	Zm.9725.1.S1_at	CF623812	-	-	3e-34	At5g57015	ckl12 (Casein Kinase I-like 12)	C.G.	S.X.	Please select
0.05	4e-6	52	Zm.6716.1.A1_at	CF636119	casein kinase I isoform delta-like	-	2e-25	At3g23340	ckl10 (Casein Kinase I-like 10)	C.G.	S.X.	Please select
0.01	6e-2	38	Zm.5471.1.A1_at	BG841029	hypothetical protein LOC100273539	-	3e-38	At3g13670	protein kinase family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.1874.1.A1_at	CF007505	NADH-ubiquinone oxidoreductase 18 kDa subunit	-	3e-11	At5g67590	FRO1 (FROSTBITE1)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.15597.1.S1_at	CD433205	hypothetical protein LOC100276919	-	5e-7	At4g28540	CKL6 (CASEIN KINASE I-LIKE 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	5e-4	46	Arabidopsis thaliana	At3g23340	821915	ckl10 (Casein Kinase I-like 10)	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	1e-8	61	Glycine max	GmaAffx.45359.2.S1_at	BQ453165	-	-	1e-60	At4g28540	CKL6 (CASEIN KINASE I-LIKE 6)	C.G.	S.X.	Please select
0.10	2e-26	119	Hordeum vulgare	Contig5413_at	Contig5413	-	-	4e-34	At3g23340	ckl10 (Casein Kinase I-like 10)	C.G.	S.X.	Please select
0.15	1e-58	228	Oryza sativa	Os10g0476300	AK120765.1	-	Casein kinase I, delta isoform (EC 2.7.1.-)(CKI-delta) (CKId) (Fragment)	7e-51	At3g23340	ckl10 (Casein Kinase I-like 10)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	7e-4	46	Populus trichocarpa	PtpAffx.211017.1.S1_at	pmrna21650	hypothetical protein	-	1e-76	At3g23340	ckl10 (Casein Kinase I-like 10)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	1e-1	38	Triticum aestivum	Ta.1594.1.S1_at	BJ286274	-	-	3e-9	At5g44100	ckl7 (Casein Kinase I-like 7)	C.G.	S.X.	Please select
0.09	3e-12	71	Vitis vinifera	1620908_at	CD013688	hypothetical protein LOC100247344	-	3e-102	At4g28880	ckl3 (Casein Kinase I-like 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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