Gene omics information

Query gene ID	Zm.12374.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.12374.1.S1_at	BQ577812	-	-	3e+0	At1g66800	cinnamyl-alcohol dehydrogenase family / CAD family	S.X.	H.G.	Please select
0.61	79.5	ZmAffx.561.1.S1_at	AI714590	Hypothetical protein LOC100192917	-	3e+0	At4g36100	-	S.X.	H.G.	Please select
0.50	65.7	Zm.8481.1.A1_at	BM074317	hypothetical protein LOC100193693	-	3e-1	At1g04645	self-incompatibility protein-related	S.X.	H.G.	Please select
0.33	36.0	Zm.4273.2.A1_at	AI665197	heat shock 70 kDa protein 4	-	3e-10	At1g79920	ATP binding	S.X.	H.G.	Please select
0.31	31.6	Zm.6307.1.A1_at	AI691328	-	-	7e-32	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	S.X.	H.G.	Please select
0.23	18.6	Zm.12531.1.A1_at	AI740174	-	-	2e+0	At3g27328	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
42.6	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.0	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.4	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.0	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.2	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	32	Zm.9749.1.S1_a_at	CO521810	-	-	3e+0	At1g02850	BGLU11 (BETA GLUCOSIDASE 11)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.6659.1.A1_at	BM075306	pathogenesis related protein-5	-	6e-1	At1g32763	-	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.5867.1.A1_at	AY103673.1	hypothetical protein LOC100191614	-	5e-89	At3g52990	pyruvate kinase, putative	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.1800.1.S1_at	CD446335	serine/threonine protein kinase	-	3e-7	At2g24360	serine/threonine/tyrosine kinase, putative	C.G.	S.X.	Please select
0.03	5e+0	30	ZmAffx.1020.1.A1_at	AI881536	-	-	3e-7	At1g75640	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please select
0.03	5e+0	30	ZmAffx.1020.1.S1_at	AI881536	-	-	3e-7	At1g75640	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.7951.1.S1_at	AY105197.1	hypothetical protein LOC100272269	-	1e-2	At1g08570	ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6673.1.A1_at	BM268104	hypothetical protein LOC100278360	-	1e-10	At1g75690	chaperone protein dnaJ-related	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.5814.1.A1_at	AI649760	hypothetical protein LOC100280358 /// set1 complex component swd2	-	9e-4	At5g66240	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	32	Arabidopsis thaliana	At1g66800	842998	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.45604.1.S1_s_at	AW185820	-	-	3e+0	At4g18360	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	C.G.	S.X.	Please select
0.05	1e+0	32	Hordeum vulgare	Contig22585_at	Contig22585	-	-	2e-1	At5g55020	MYB120 (MYB DOMAIN PROTEIN 120)	C.G.	S.X.	Please select
0.04	1e+0	34	Oryza sativa	Os12g0458900	AK062722.1	-	Hypothetical protein	1e+0	At5g48860	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+1	30	Populus trichocarpa	PtpAffx.67862.1.A1_at	BP933754	-	-	4e-9	At5g63640	VHS domain-containing protein / GAT domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+1	30	Triticum aestivum	TaAffx.93400.2.S1_at	BJ260476	-	-	1e+0	At2g32360	ubiquitin family protein	C.G.	S.X.	Please select
0.03	3e+0	30	Vitis vinifera	1622870_at	CB348576	hypothetical protein LOC100245835	-	3e-13	At4g25750	ABC transporter family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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