Gene omics information

Query gene ID	Zm.12369.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.12369.1.S1_at	AY107124.1	-	-	2e+1	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	S.X.	H.G.	Please select
0.67	85.8	Zm.2611.1.A1_a_at	BM348249	hypothetical protein LOC100278318	-	3e-1	At1g49820	ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)	S.X.	H.G.	Please select
0.61	79.5	Zm.2823.1.A1_at	BI097694	ankyrin protein kinase-like	-	2e+1	At5g40260	nodulin MtN3 family protein	S.X.	H.G.	Please select
0.60	77.8	Zm.12678.2.S1_at	CN844593	-	-	8e-11	At3g05030	NHX2 (SODIUM HYDROGEN EXCHANGER 2)	S.X.	H.G.	Please select
0.33	36.0	ZmAffx.531.1.A1_at	AI711719	-	-	8e-1	At5g20370	serine-rich protein-related	S.X.	H.G.	Please select
0.33	36.0	Zm.5070.1.A1_at	AY108736.1	hypothetical protein LOC100193023	-	2e-16	At1g22950	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.3	99.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.7	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.6	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.8	99.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.9	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.0	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.2	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	4e-8	57	Zm.18288.1.A1_at	CO525030	hypothetical protein LOC100194191	-	2e+0	At5g23950	C2 domain-containing protein	C.G.	S.X.	Please select
0.07	4e-5	48	Zm.11612.1.A1_at	CF634224	-	-	3e-1	At1g06135	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.1327.1.A1_at	BE643637	hypothetical protein LOC100273057	-	5e+0	At5g24860	FPF1 (FLOWERING PROMOTING FACTOR 1)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.777.1.S1_a_at	CD442368	hypothetical protein LOC100272376	-	4e-8	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.6514.1.A1_at	CF636002	hypothetical protein LOC100276806	-	7e-1	At5g38317	LCR58 (Low-molecular-weight cysteine-rich 58)	C.G.	S.X.	Please select
0.03	6e-1	34	Zm.11476.1.A1_at	AY104717.1	hypothetical protein LOC100277572	-	5e+0	At2g28210	ATACA2 (ALPHA CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.830.1.S1_at	AA979901	-	-	5e-1	At1g14150	oxygen evolving enhancer 3 (PsbQ) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.7635.1.A1_at	AW433467	hypothetical protein LOC100272963	-	3e-15	At5g58070	TIL (TEMPERATURE-INDUCED LIPOCALIN)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.6763.4.S1_at	BG841872	hypothetical protein LOC100279574	-	8e-6	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+1	30	Arabidopsis thaliana	At5g13850	831231	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	F:molecular_function unknown;P:response to salt stress;C:cytosolic ribosome;MFOPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	HgAffx.22593.1.S1_at	BI396632	-	-	3e-1	At4g28150	unknown protein	C.G.	S.X.	Please select
0.04	5e-2	38	Hordeum vulgare	Contig19330_at	Contig19330	-	-	8e+0	At5g23420	HMGB6	C.G.	S.X.	Please select
0.08	1e-11	71	Oryza sativa	Os06g0725200	AK065261.1	-	Lipolytic enzyme, G-D-S-L family protein	2e-1	At5g66370	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.220262.1.S1_at	pmrna36629	hypothetical protein	-	1e+1	At4g25780	pathogenesis-related protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	1e-4	48	Triticum aestivum	TaAffx.43554.1.S1_at	AJ613197	-	-	6e+0	At1g21970	LEC1 (LEAFY COTYLEDON 1)	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1616734_at	CF405846	hypothetical protein LOC100254730	-	4e+0	At4g29670	thioredoxin family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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