Gene omics information

Query gene ID	Zm.12365.1.S1_at
Gene name	hypothetical protein LOC100193020
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.12365.1.S1_at	AY106477.1	hypothetical protein LOC100193020	-	6e-1	At1g69680	-	S.X.	H.G.	Please select
0.67	85.8	Zm.6522.2.A1_a_at	AY108423.1	mpv17 / PMP22 family protein	-	2e-4	At1g52870	peroxisomal membrane protein-related	S.X.	H.G.	Please select
0.50	65.7	Zm.6521.1.A1_at	AW067094	protein binding protein	-	7e-5	At1g68820	membrane protein, putative	S.X.	H.G.	Please select
0.44	55.7	Zm.2133.1.A1_at	BG873907	-	-	8e-2	At3g01513	unknown protein	S.X.	H.G.	Please select
0.27	24.6	Zm.1980.1.A1_at	CF630017	hypothetical protein LOC100193990	-	2e+0	At4g14410	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.17	10.6	Zm.13619.1.A1_at	CF630917	hypothetical protein LOC100192497 /// serine/threonine-protein kinase SAPK2 /// serine/threonine-protein kinase SAPK2	-	1e-30	At4g33950	OST1 (OPEN STOMATA 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.0	96.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.5	95.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM206288	Upper pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.3	94.7	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.3	94.7	GSM206296	Lower pulvinus 15 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.2	94.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-2	38	Zm.13994.1.A1_at	AY108918.1	-	-	7e-3	At3g58060	cation efflux family protein / metal tolerance protein, putative (MTPc3)	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.872.2.S1_at	BU097971	-	-	2e-15	At1g77610	glucose-6-phosphate/phosphate translocator-related	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.872.2.A1_a_at	BU097971	hypothetical protein LOC100280075	-	2e-15	At1g77610	glucose-6-phosphate/phosphate translocator-related	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.5384.1.S1_at	AY105996.1	hypothetical protein LOC100274554	-	9e-4	At5g08370	AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.10172.1.A1_at	CO532781	hypothetical protein LOC100273092	-	2e-1	At1g01720	ATAF1	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.8884.1.A1_at	CF018008	hypothetical protein LOC100280133	-	3e-9	At3g48890	ATMP2	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.711.1.S1_at	AY197773.1	Fructokinase 2	-	3e-3	At4g10260	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.2605.1.S1_at	AY105350.1	hypothetical protein LOC100192590	-	2e+0	At5g41670	6-phosphogluconate dehydrogenase family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.19195.1.S1_at	AY105514.1	hypothetical protein LOC100274054	-	1e-2	At2g24450	FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-1	36	Arabidopsis thaliana	At1g69680	843304	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	8e-1	36	Glycine max	Gma.977.1.S1_at	BI945173	-	-	3e-4	At1g69680	-	C.G.	S.X.	Please select
0.02	5e+0	32	Hordeum vulgare	Contig18108_at	Contig18108	-	-	2e+0	At5g05990	mitochondrial glycoprotein family protein / MAM33 family protein	C.G.	S.X.	Please select
0.40	2e-104	381	Oryza sativa	Os04g0459600	AK061516.1	-	Ran-interacting Mog1 protein domain containingprotein	1e-1	At1g69680	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.209977.1.S1_at	pmrna19680	-	-	6e-9	Atcg00905	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	2e-37	157	Triticum aestivum	TaAffx.110991.1.S1_at	CA650157	-	-	6e-2	At2g20120	COV1 (CONTINUOUS VASCULAR RING)	C.G.	S.X.	Please select
0.02	1e-2	40	Vitis vinifera	1616266_at	CF215736	hypothetical protein LOC100254522	-	4e-1	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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