Gene omics information

Query gene ID	Zm.12338.1.S1_at
Gene name	hypothetical protein LOC100276807
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.12338.1.S1_at	BQ744947	hypothetical protein LOC100276807	-	5e+0	At5g40451	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.6419.1.A1_at	CF635415	xyloglucan endotransglucosylase/hydrolase	-	3e-6	At5g13870	EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)	S.X.	H.G.	Please select
0.67	85.8	Zm.4336.1.S1_at	CA403908	hypothetical protein LOC100274309	-	4e+0	At5g38580	-	S.X.	H.G.	Please select
0.63	81.1	Zm.6505.1.A1_at	AI692111	SAM domain family protein	-	2e-1	At5g52220	-	S.X.	H.G.	Please select
0.63	81.1	Zm.6503.1.A1_at	CK370921	-	-	1e-1	At1g04445	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.54	69.8	Zm.6381.1.A1_at	CO534945	hypothetical protein LOC100273528	-	2e+0	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	S.X.	H.G.	Please select
0.50	65.7	Zm.12612.1.A1_at	BU050513	-	-	6e-1	At1g23260	MMZ1 (MMS ZWEI HOMOLOGUE 1)	S.X.	H.G.	Please select
0.44	55.7	Zm.5017.1.S1_at	BM072931	dynamin-related protein 1C	-	5e-46	At1g14830	ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C)	S.X.	H.G.	Please select
0.40	48.5	Zm.5612.1.A1_at	AY106400.1	L-galactose dehydrogenase	-	7e-10	At4g33670	L-galactose dehydrogenase (L-GalDH)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.7	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.0	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.8	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.0	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.6	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.4	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	36	Zm.4465.1.A1_at	AI714996	-	-	2e-1	At3g27210	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.9966.1.A1_at	AY107742.1	hypothetical protein LOC100191214	-	1e-42	At2g32980	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.9856.1.S1_at	BM381423	hypothetical protein LOC100272496	-	4e-2	At5g40150	peroxidase, putative	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.7659.1.S1_at	AY639019.1	phosphate transport protein	-	5e-12	At5g43360	PHT3 (PHOSPHATE TRANSPORTER 3)	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.6000.1.S1_at	BG265807	surfeit locus protein 2 containing protein	-	9e-3	At1g20470	auxin-responsive family protein	C.G.	S.X.	Please select
0.04	5e-1	34	Zm.4200.1.A1_at	BM380609	protein phosphatase 2C	-	1e+1	At5g25280	serine-rich protein-related	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.4077.1.S1_x_at	AY105154.1	-	-	9e-7	At3g07880	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.4077.1.S1_at	AY105154.1	-	-	9e-7	At3g07880	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.2647.1.A1_at	BG268724	hypothetical protein LOC100192886	-	1e-4	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At5g40451	6241415	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e-3	42	Glycine max	PsAffx.C67000031_at	PsAffx.C67000031	-	-	4e+0	At5g18362	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	36	Hordeum vulgare	Contig14011_at	Contig14011	-	-	1e-1	At2g05400	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.18	4e-30	133	Oryza sativa	Os01g0963800	AK107518.1	-	Hypothetical protein	4e-1	At5g44495	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.39391.2.S1_at	CK094897	-	-	5e+0	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-2	38	Triticum aestivum	TaAffx.106160.1.S1_at	CA723806	-	-	4e+0	At5g55260	PPX2 (PROTEIN PHOSPHATASE X 2)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1609492_at	CF207755	hypothetical protein LOC100248221	-	4e+0	At5g43480	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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