Gene omics information

Query gene ID	Zm.12326.1.S1_at
Gene name	hypothetical protein LOC100278585
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.12326.1.S1_at	BQ703243	hypothetical protein LOC100278585	-	8e-2	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	S.X.	H.G.	Please select
0.80	94.0	ZmAffx.391.1.S1_at	AI676819	-	-	1e-2	At2g25685	SCRL17 (SCR-Like 17)	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.227.1.S1_at	AI670239	-	-	3e+0	At5g50410	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.2591.1.A1_at	CD433382	autophagy-related 8c	-	4e-51	At1g62040	ATG8C (autophagy 8c)	S.X.	H.G.	Please select
0.38	44.2	Zm.7010.3.S1_at	AI691447	-	-	5e-2	At2g32100	OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)	S.X.	H.G.	Please select
0.28	28.1	Zm.3303.2.A1_at	CO527646	lipoxygenase	-	3e+0	At3g22400	LOX5	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.2	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-2	38	Zm.2125.1.S1_at	AA979871	NADH ubiquinone oxidoreductase1	-	8e-19	At5g52840	NADH-ubiquinone oxidoreductase-related	C.G.	S.X.	Please select
0.06	1e-1	36	Zm.9415.2.A1_at	BM348481	-	-	7e-2	At5g01075	beta-galactosidase	C.G.	S.X.	Please select
0.05	1e-1	36	Zm.9415.1.A1_at	BM341676	-	-	7e-2	At5g01075	beta-galactosidase	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.5212.1.S1_at	CD444837	hypothetical protein LOC100277113	-	4e-2	At2g20760	protein binding / structural molecule	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.4896.1.A1_x_at	BM350512	IAA13 - auxin-responsive Aux/IAA family member	-	3e-9	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.4896.1.A1_at	BM350512	IAA13 - auxin-responsive Aux/IAA family member	-	3e-9	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.5851.2.A1_at	BM267859	hypothetical protein LOC100278946	-	4e-1	At3g28220	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.5524.1.S1_at	AY104178.1	hypothetical protein LOC100277069	-	4e-3	At4g23800	high mobility group (HMG1/2) family protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.4578.2.S1_at	CO521260	hypothetical protein LOC100279630 /// MADS1	-	2e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e-2	38	Arabidopsis thaliana	At3g56910	824858	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	PsAffx.CL2067Contig1_at	PsAffx.CL2067Contig1	-	-	2e-3	At5g01075	beta-galactosidase	C.G.	S.X.	Please select
0.25	1e-66	252	Hordeum vulgare	Contig14599_at	Contig14599	-	-	3e-2	At3g17160	unknown protein	C.G.	S.X.	Please select
0.26	3e-55	216	Oryza sativa	Os03g0279600	AK061080.1	-	Hypothetical protein	6e-1	At1g12665	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Populus trichocarpa	PtpAffx.223811.1.S1_at	pmrna42011	hypothetical protein	-	2e-1	At1g12665	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	1e-25	117	Triticum aestivum	TaAffx.84998.1.S1_at	CA626492	-	-	6e-2	At3g27830	RPL12-A (RIBOSOMAL PROTEIN L12-A)	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1610190_at	CF206158.1	-	-	2e-12	At2g47400	CP12-1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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