Gene omics information

Query gene ID	Zm.12306.1.S1_at
Gene name	hypothetical protein LOC100216558
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.12306.1.S1_at	CO517988	hypothetical protein LOC100216558	-	5e-2	At5g19680	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.237.1.A1_at	AI670249	-	-	1e+1	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	S.X.	H.G.	Please select
0.67	85.8	Zm.18127.1.S1_at	CN845217	membrin 11	-	1e-8	At5g50440	MEMB12 (MEMBRIN 12)	S.X.	H.G.	Please select
0.29	28.1	Zm.17283.1.A1_at	CK368046	hypothetical protein LOC100194129	-	1e-1	At3g51960	bZIP family transcription factor	S.X.	H.G.	Please select
0.27	24.6	Zm.3180.1.A1_at	AW179477	-	-	7e-1	At1g32700	zinc-binding family protein	S.X.	H.G.	Please select
0.19	12.8	ZmAffx.1019.1.S1_at	AI881532	-	-	3e+0	At2g29070	ubiquitin fusion degradation UFD1 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	97.5	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.8	96.6	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.5	96.3	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.3	96.1	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.2	96.0	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.2	96.0	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.2	96.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	34	Zm.4077.1.S1_x_at	AY105154.1	-	-	9e-7	At3g07880	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.4077.2.A1_at	BG266548	-	-	1e-9	At1g62450	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.4077.1.S1_at	AY105154.1	-	-	9e-7	At3g07880	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.4077.2.A1_a_at	BG266548	rho GDP-dissociation inhibitor 1	-	1e-9	At1g62450	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.4077.2.A1_x_at	BG266548	rho GDP-dissociation inhibitor 1	-	1e-9	At1g62450	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.3884.1.A1_at	BQ486479	alpha-expansin 9	-	1e-1	At1g04778	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.15936.1.A1_a_at	U40147.1	acidic ribosomal protein P1a	-	6e-3	At5g24510	60s acidic ribosomal protein P1, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.15792.1.A1_at	CD437395	-	-	2e+0	At5g18450	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.13162.1.A1_at	CO521967	-	-	9e-3	At3g02040	SRG3 (senescence-related gene 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	5e-2	40	Arabidopsis thaliana	At5g19680	832088	leucine-rich repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	1e+0	36	Glycine max	PsAffx.psHB019xG12f_at	PsAffx.psHB019xG12f	-	-	6e+0	At1g76180	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	C.G.	S.X.	Please select
0.48	6e-111	400	Hordeum vulgare	Contig16512_at	Contig16512	-	-	8e-9	At5g19680	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.46	5e-164	579	Oryza sativa	Os02g0230100	AK101441.1	-	Leucine-rich repeat, typical subtype containingprotein	3e-6	At5g19680	leucine-rich repeat family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	3e-7	57	Populus trichocarpa	PtpAffx.12058.1.A1_s_at	CV242166	hypothetical protein	-	1e-36	At5g19680	leucine-rich repeat family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.32	2e-155	549	Triticum aestivum	TaAffx.85333.1.S1_at	CA623650	-	-	3e+0	At3g32200	-	C.G.	S.X.	Please select
0.02	9e-1	34	Vitis vinifera	1617080_s_at	CD801784	hypothetical protein LOC100266745	-	2e+0	At3g54080	sugar binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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