Gene omics information

Query gene ID	Zm.123.1.S1_at
Gene name	heat shock complementing factor1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.123.1.S1_at	AY109146.1	heat shock complementing factor1	-	2e-5	At5g57390	AIL5 (AINTEGUMENTA-LIKE 5)	S.X.	H.G.	Please select
0.59	76.1	Zm.12304.1.A1_at	CF637007	hypothetical protein LOC100274389	-	2e+0	At1g64720	CP5	S.X.	H.G.	Please select
0.50	65.7	Zm.6106.1.A1_at	AI670203	-	-	8e-1	At5g37370	ATSRL1	S.X.	H.G.	Please select
0.38	44.2	Zm.11800.1.A1_x_at	CN844844	hypothetical protein LOC100191350	-	5e+0	At4g32240	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.2332.1.S1_at	BM078826	hypothetical protein LOC100276799	-	2e+0	At2g20940	unknown protein	S.X.	H.G.	Please select
0.21	15.5	Zm.13514.2.S1_a_at	AY108547.1	phytoene synthase 2	-	2e-6	At5g17230	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.5	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.4	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.2	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	6e-3	42	Zm.366.1.S1_at	AF048900.1	indeterminate spikelet1	-	3e-16	At5g60120	TOE2	C.G.	S.X.	Please select
0.02	6e-3	42	Zm.15888.1.S1_at	CD998622	ribonucleoprotein A	-	6e-4	At2g37220	29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative	C.G.	S.X.	Please select
0.02	3e-2	40	Zm.8492.1.A1_at	CO518733	cyclin-dependent kinases regulatory subunit	-	4e-7	At2g27960	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.7598.1.A1_at	CF629653	-	-	3e-3	At2g40510	40S ribosomal protein S26 (RPS26A)	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.3997.1.A1_at	AY109998.1	cyclin-dependent kinases regulatory subunit	-	6e-28	At2g27960	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	C.G.	S.X.	Please select
0.04	1e-1	38	Zm.8972.1.S1_at	CD435957	hypothetical protein LOC100217237	-	7e-17	At3g54320	WRI1 (WRINKLED 1)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.8993.1.A1_a_at	AI649732	hypothetical protein LOC100194128 /// hypothetical protein LOC100194385	-	2e-27	At5g57655	xylose isomerase family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.8993.1.A1_at	AI649732	hypothetical protein LOC100194128	-	2e-27	At5g57655	xylose isomerase family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.8233.1.S1_a_at	AY103797.1	-	-	6e-14	At2g24590	splicing factor, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-5	52	Arabidopsis thaliana	At5g57390	835845	AIL5 (AINTEGUMENTA-LIKE 5)	Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.32	1e-34	149	Glycine max	GmaAffx.91601.1.S1_s_at	CF807326	-	-	1e-47	At5g57390	AIL5 (AINTEGUMENTA-LIKE 5)	C.G.	S.X.	Please select
0.03	1e-4	48	Hordeum vulgare	Contig15309_at	Contig15309	-	-	1e-2	At4g37750	ANT (AINTEGUMENTA)	C.G.	S.X.	Please select
0.48	0	680	Oryza sativa	Os06g0657500	AK101959.1	-	ANT (Ovule development protein aintegumenta)	3e-10	At5g57390	AIL5 (AINTEGUMENTA-LIKE 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	2e-11	71	Populus trichocarpa	PtpAffx.214377.1.S1_s_at	pmrna27977	AP2 domain-containing transcription factor /// AP2 domain-containing transcription factor	-	1e-24	At5g65510	AIL7 (AINTEGUMENTA-like 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-7	57	Triticum aestivum	TaAffx.64176.1.S1_at	BJ312281	-	-	8e-11	At1g72570	DNA binding / transcription factor	C.G.	S.X.	Please select
0.04	3e-1	36	Vitis vinifera	1614311_at	CF516097	hypothetical protein LOC100264243	-	2e-6	At1g15780	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage