Gene omics information

Query gene ID	Zm.12244.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.12244.1.A1_at	AY105130.1	-	-	4e-8	At2g37500	arginine biosynthesis protein ArgJ family	S.X.	H.G.	Please select
0.91	99.0	Zm.6103.3.S1_at	AI668289	-	-	8e-1	At1g21010	unknown protein	S.X.	H.G.	Please select
0.80	94.0	Zm.16462.1.A1_at	AY347711.1	Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase	-	7e+0	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	S.X.	H.G.	Please select
0.77	92.1	Zm.6915.1.S1_at	AW256266	hypothetical protein LOC100280116	-	5e-1	At5g64160	unknown protein	S.X.	H.G.	Please select
0.56	74.4	Zm.6916.1.S1_at	AW067358	hypothetical protein LOC100273981	-	9e-13	At5g66750	CHR1 (CHROMATIN REMODELING 1)	S.X.	H.G.	Please select
0.47	59.9	Zm.3743.2.S1_at	AY109746.1	-	-	2e+0	At5g04045	Expressed protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.2	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.1	96.8	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.9	95.7	GSM202318	B73xMo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.7	95.4	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.7	95.4	GSM202311	Mo17xB73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.6	95.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2391	Zm.12244.1.S1_at	AY105130.1	-	-	4e-8	At2g37500	arginine biosynthesis protein ArgJ family	C.G.	S.X.	Please select
1.00	0	2391	Zm.12244.1.A1_a_at	AY105130.1	-	-	4e-8	At2g37500	arginine biosynthesis protein ArgJ family	C.G.	S.X.	Please select
0.23	4e-102	371	Zm.12244.2.S1_at	AI668243	-	-	9e-1	At5g46940	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.23	4e-102	371	Zm.12244.2.A1_x_at	AW267221	-	-	9e-1	At5g46940	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.23	4e-102	371	Zm.12244.2.S1_a_at	AI668243	-	-	9e-1	At5g46940	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.23	4e-102	371	Zm.12244.2.S1_x_at	AI668243	-	-	9e-1	At5g46940	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.23	4e-102	371	Zm.12244.2.A1_at	AW267221	-	-	9e-1	At5g46940	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.7306.1.S1_at	AB044567.1	Ca2+/H+ antiporter	-	7e-11	At3g13320	CAX2 (CATION EXCHANGER 2)	C.G.	S.X.	Please select
0.02	4e+0	32	ZmAffx.170.1.S1_at	AI668224	-	-	8e-1	At1g13245	RTFL17 (ROTUNDIFOLIA LIKE 17)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	4e-8	59	Arabidopsis thaliana	At2g37500	818326	arginine biosynthesis protein ArgJ family	F:glutamate N-acetyltransferase activity;P:arginine biosynthetic process;C:chloroplast;OBFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.26	3e-13	77	Glycine max	GmaAffx.55072.2.S1_at	BI942288	-	-	9e-23	At2g37500	arginine biosynthesis protein ArgJ family	C.G.	S.X.	Please select
0.50	0	678	Hordeum vulgare	Contig7802_at	Contig7802	-	-	4e-9	At2g37500	arginine biosynthesis protein ArgJ family	C.G.	S.X.	Please select
0.50	1e-157	557	Oryza sativa	Os03g0279400	AK106253.1	-	Arginine biosynthesis protein ArgJ family protein	2e-10	At2g37500	arginine biosynthesis protein ArgJ family	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	1e-15	85	Populus trichocarpa	PtpAffx.15954.1.A1_at	CV243813	hypothetical protein	-	1e-41	At2g37500	arginine biosynthesis protein ArgJ family	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	0	664	Triticum aestivum	Ta.918.1.S1_at	CK153599	-	-	1e-6	At2g37500	arginine biosynthesis protein ArgJ family	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1609056_at	CF511437	-	-	4e+0	At3g48208	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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