Gene omics information

Query gene ID	Zm.12236.1.A1_at
Gene name	hypothetical protein LOC100194199
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.36	41.3	Zm.12236.1.A1_at	CA830514	hypothetical protein LOC100194199	-	5e+0	At3g13970	APG12B (AUTOPHAGY 12 B)	S.X.	H.G.	Please select
0.67	85.8	Zm.4385.1.S1_at	BQ487047	small nuclear ribonucleoprotein-associated protein B	-	3e-15	At5g44500	small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative	S.X.	H.G.	Please select
0.67	85.8	Zm.3633.2.S1_x_at	CF634876	APx1 - Cytosolic Ascorbate Peroxidase	-	3e-28	At1g07890	APX1 (ascorbate peroxidase 1)	S.X.	H.G.	Please select
0.63	81.1	Zm.11605.1.A1_at	BM379262	-	-	4e+0	At4g11930	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.9989.1.A1_at	BM332236	DNA binding protein	-	5e+0	At5g03090	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.8233.1.A1_at	AI947630	-	-	1e-2	At4g31580	SRZ-22	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.8	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	3e-76	284	Zm.5427.1.A1_at	CO521891	-	-	5e+0	At4g35930	-	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.4340.1.A1_at	M76685.1	orange pericarp2	-	2e-29	At4g27070	TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2)	C.G.	S.X.	Please select
0.01	2e+0	32	ZmAffx.1334.1.S1_at	11990232-82	-	-	7e-113	Atcg01010	-	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.3044.1.S1_at	AW360661	-	-	2e-10	At1g27900	RNA helicase, putative	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.219.1.A1_at	CO531918	-	-	3e+0	At2g35730	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.19008.1.A1_at	CF011535	-	-	6e-3	At4g36770	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.7691.1.A1_at	BM078399	hypothetical protein LOC100273759	-	2e-2	At3g08730	PK1 (PROTEIN-SERINE KINASE 1)	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.6497.1.A1_at	AI692097	serine/threonine-protein kinase AtPK19	-	5e+0	At3g08730	PK1 (PROTEIN-SERINE KINASE 1)	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.2860.1.S1_at	AI691355	hypothetical protein LOC100279707	-	3e-62	At5g46290	KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	32	Arabidopsis thaliana	At3g13970	820611	APG12B (AUTOPHAGY 12 B)	F:molecular_function unknown;P:autophagy, autophagic vacuole formation;C:cytoplasm;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	32	Glycine max	HgAffx.8762.1.S1_at	CB379739	-	-	1e+0	At5g25830	zinc finger (GATA type) family protein	C.G.	S.X.	Please select
0.19	4e-11	67	Hordeum vulgare	Contig19999_at	Contig19999	-	-	7e-10	At4g35930	-	C.G.	S.X.	Please select
0.27	3e-15	83	Oryza sativa	Os10g0438500	AK103093.1	-	Cyclin-like F-box domain containing protein	3e-3	At4g35930	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	Ptp.5220.1.S1_at	CK089407	hypothetical protein	-	5e-6	At2g36060	ubiquitin-conjugating enzyme family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	4e-13	75	Triticum aestivum	Ta.7684.1.A1_at	BJ264188	-	-	4e+0	At1g08970	NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1614036_s_at	CF200941.1	hypothetical protein LOC100249711	-	2e+0	At1g67195	MIR414 (MICRORNA 414)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage