Gene omics information

Query gene ID	Zm.12201.1.A1_at
Gene name	plastid ADP-glucose pyrophosphorylase large subunit
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.12201.1.A1_at	BM379502	plastid ADP-glucose pyrophosphorylase large subunit	-	3e-13	At5g19220	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	S.X.	H.G.	Please select
0.73	89.9	Zm.15486.2.S1_at	AY108982.1	-	-	7e-20	At1g71270	POK (POKY POLLEN TUBE)	S.X.	H.G.	Please select
0.71	88.2	RPTR-Zm-M57289-1_s_at	RPTR-Zm-M57289-1	-	-	0			S.X.	H.G.	Please select
0.60	77.8	Zm.14288.1.A1_at	BM348960	-	-	1e-37	At1g60780	HAP13 (HAPLESS 13)	S.X.	H.G.	Please select
0.53	69.1	Zm.6217.1.A1_at	BE129797	plant-specific domain TIGR01589 family protein	-	7e-1	At1g28600	lipase, putative	S.X.	H.G.	Please select
0.50	65.7	Zm.10852.1.A1_at	BM078475	-	-	5e-1	At2g35240	plastid developmental protein DAG, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.7	97.9	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
7.6	97.9	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
7.0	97.7	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM253268	ZM_4.5d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.1	97.4	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	3e-57	222	ZmAffx.1158.1.S1_at	AW438209	-	-	3e+0	At5g37475	translation initiation factor-related	C.G.	S.X.	Please select
0.23	3e-57	222	ZmAffx.1158.1.A1_at	AW438209	-	-	3e+0	At5g37475	translation initiation factor-related	C.G.	S.X.	Please select
0.02	1e-1	38	Zm.649.1.S1_at	AY032604.1	ADP-glucose pyrophosphorylase small subunit	-	5e-43	At5g48300	ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.6067.1.S1_at	CA398401	-	-	6e-2	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.3699.4.S1_at	CD441140	-	-	5e-3	At3g63130	RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.17147.1.A1_at	AF330035.1	ADP-glucose pyrophosphorylase small subunit	-	6e-82	At5g48300	ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.9806.1.S1_at	BM339423	hypothetical protein LOC100278385	-	2e-2	At2g47180	AtGolS1 (Arabidopsis thaliana galactinol synthase 1)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.8241.1.A1_at	BM349920	ribosome-like protein	-	2e+0	At5g42635	glycine-rich protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.8040.1.A1_a_at	BM073932	hypothetical protein LOC100274921	-	1e+0	At5g46620	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	3e-13	77	Arabidopsis thaliana	At5g19220	832042	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	Encodes the large subunit of ADP-glucose pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL1 is the major large subunit isoform present in leaves. Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	2e-11	71	Glycine max	GmaAffx.62968.1.S1_at	BF069415	-	-	1e-41	At5g19220	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	C.G.	S.X.	Please select
0.55	0	1178	Hordeum vulgare	Contig5267_at	Contig5267	ADP-glucose pyrophosphorylase large subunit	-	4e-52	At5g19220	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	C.G.	S.X.	Please select
0.20	9e-52	206	Oryza sativa	Os03g0735000	AK105092.1	-	ADP-glucose pyrophosphorylase large subunit (EC2.7.7.27)	4e-10	At5g19220	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	4e-13	77	Populus trichocarpa	Ptp.1098.1.A1_at	CK089784	hypothetical protein	-	2e-15	At5g19220	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.52	1e-151	537	Triticum aestivum	Ta.23665.1.S1_at	X14348.1	ADP-glucose pyrophosophorylase	-	4e-23	At5g19220	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	C.G.	S.X.	Please select
0.03	3e-1	36	Vitis vinifera	1607802_at	CF516547	-	-	6e+0	At5g25300	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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