Gene omics information

Query gene ID Zm.12184.1.A1_at
Gene name
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7792.1Zm.12184.1.A1_atBM380021--6e-10At4g11960PGRL1B (PGR5-Like B)S.X.H.G.
0.6077.8Zm.7054.1.S1_atBM331766actin-depolymerizing factor 6-6e-4At5g59890ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)S.X.H.G.
0.5065.7Zm.15242.1.A1_atBM340075--1e+1At3g16712unknown proteinS.X.H.G.
0.4658.4Zm.3851.4.A1_atCD441077--1e+0At5g12470unknown proteinS.X.H.G.
0.4251.3ZmAffx.89.1.A1_atAI665353hypothetical protein LOC100277768-1e+1At5g20560beta-1,3-glucanase, putativeS.X.H.G.
0.3844.2Zm.17928.1.A1_atBQ538697hypothetical protein LOC100217238-4e+0At5g09660PMDH2 (peroxisomal NAD-malate dehydrogenase 2)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
10.998.5GSM253276ZM_8d_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydis
10.498.4GSM253275ZM_8d_Mock_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydis
10.198.4GSM253263ZM_4d_Mock_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydis
10.098.4GSM253274ZM_8d_Mock_3inf_IGSE10023Maize gene expression during infection with Ustilago maydis
9.898.3GSM253262ZM_4d_Mock_3inf_IGSE10023Maize gene expression during infection with Ustilago maydis
9.798.3GSM253264ZM_4d_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydis
9.498.3GSM320439protocol: mRNA - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.798.1GSM320440protocol: mRNA - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.698.1GSM320441protocol: mRNA - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.298.0GSM320438protocol: mRNA - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.239e-44176Zm.6593.1.S1_atCO527833--4e-3At4g22890PGR5-LIKE AC.G.S.X.
0.029e-134ZmAffx.854.1.A1_atAI770665--8e-7At5g48900pectate lyase family proteinC.G.S.X.
0.029e-134ZmAffx.854.1.S1_atAI770665hypothetical protein LOC100273705-5e-8At4g24780pectate lyase family proteinC.G.S.X.
0.013e+032Zm.5229.1.A1_atCO519750ATP-dependent transporter ycf16-4e-24At3g10670ATNAP7C.G.S.X.
0.023e+032Zm.4754.1.A1_atBG26652860S ribosome subunit biogenesis protein NIP7-2e+0At5g14070ROXY2C.G.S.X.
0.013e+032Zm.4623.1.A1_atAY104590.1Hypothetical protein LOC100217143-1e-3At1g23870ATTPS9C.G.S.X.
0.013e+032Zm.4623.1.S1_x_atAI372203Hypothetical protein LOC100217143-6e-2At1g68020ATTPS6C.G.S.X.
0.013e+032Zm.4623.1.S1_atAI372203Hypothetical protein LOC100217143-6e-2At1g68020ATTPS6C.G.S.X.
0.023e+032Zm.3982.1.A1_atAW14668450S ribosomal protein L21-2e-3At1g3568050S ribosomal protein L21, chloroplast / CL21 (RPL21)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.246e-1065Arabidopsis thalianaAt4g11960826803PGRL1B (PGR5-Like B)Encodes PGRL1B, a transmembrane protein present in thylakoids. PGRL1B has a highly homologous isoform PGRL1A encoded by At4g22890. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I).---C.G.S.X.
0.158e-1375Glycine maxGma.7210.1.S1_atBE822041--3e-52At4g11960PGRL1B (PGR5-Like B)C.G.S.X.
0.232e-54212Hordeum vulgareContig4591_atContig4591--4e-2At4g22890PGR5-LIKE AC.G.S.X.
0.481e-104381Oryza sativaOs08g0526300AK070382.1-Conserved hypothetical protein3e-12At4g11960PGRL1B (PGR5-Like B)C.G.S.X.
0.193e-1583Populus trichocarpaPtpAffx.10960.1.S1_atCV283281hypothetical protein-7e-44At4g11960PGRL1B (PGR5-Like B)C.G.S.X.
0.674e-171601Triticum aestivumTa.20630.1.S1_atCA485717--7e-3At4g11960PGRL1B (PGR5-Like B)C.G.S.X.
0.231e-859Vitis vinifera1608443_atCF518923hypothetical protein LOC100242824-3e-27At4g11960PGRL1B (PGR5-Like B)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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