Gene omics information

Query gene ID	Zm.12177.1.A1_at
Gene name	hypothetical protein LOC100193797
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	55.7	Zm.12177.1.A1_at	BM380114	hypothetical protein LOC100193797	-	3e-1	At2g05752	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.17272.1.S1_at	CK371238	-	-	8e-6	At2g41190	amino acid transporter family protein	S.X.	H.G.	Please select
0.35	38.9	Zm.8348.1.A1_at	BM073795	Hypothetical protein LOC100193915	-	3e-1	At3g20750	zinc finger (GATA type) family protein	S.X.	H.G.	Please select
0.30	29.8	Zm.8037.1.A1_at	BM073083	-	-	1e+0	At5g58580	ATL63 (ARABIDOPSIS TÓ	S.X.	H.G.	Please select
0.16	9.4	ZmAffx.1022.1.S1_at	AI881590	-	-	3e+0	At5g46800	BOU (A BOUT DE SOUFFLE)	S.X.	H.G.	Please select
0.10	4.6	Zm.17615.1.A1_at	CK347383	protein binding protein	-	2e+0	At2g20620	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
45.2	100.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.1	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.8	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.6	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-1	36	Zm.2286.1.S1_at	BF728284	-	-	1e+0	At1g80700	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.17519.1.A1_at	BQ538711	FIP1	-	1e-1	At5g23370	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.6210.2.A1_at	CF631508	vacuolar ATP synthase 16 kDa proteolipid subunit	-	7e-31	At1g19910	AVA-P2	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.19149.1.A1_at	CO526377	-	-	2e-1	At3g44020	thylakoid lumenal P17.1 protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.19149.1.S1_at	CO526376	hypothetical protein LOC100272365	-	2e-1	At3g44020	thylakoid lumenal P17.1 protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.10632.1.A1_at	BQ538717	-	-	6e-3	At2g45530	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.10116.1.A1_at	AY108928.1	-	-	5e+0	At3g06790	plastid developmental protein DAG, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.10116.1.S1_at	AY108928.1	-	-	5e+0	At3g06790	plastid developmental protein DAG, putative	C.G.	S.X.	Please select
0.02	8e+0	30	ZmAffx.1524.1.S1_at	40794996-121	-	-	3e+0	At3g58020	heat shock protein binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At2g05752	815125	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	Gma.17383.1.S1_at	BG510960	-	-	1e+0	At1g15270	-	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig14196_at	Contig14196	-	-	2e+0	At2g15910	CSL zinc finger domain-containing protein	C.G.	S.X.	Please select
0.06	2e-4	48	Oryza sativa	Os06g0271500	AK065764.1	-	En/Spm-like transposon proteins family protein	2e-1	At3g57785	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	Ptp.6079.2.A1_at	CK094662	-	-	4e+0	At5g23460	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	2e-2	40	Triticum aestivum	TaAffx.38541.1.S1_at	BJ220282	-	-	1e+0	At3g24100	-	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1619670_at	CF568831	-	-	3e-19	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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