Gene omics information

Query gene ID	Zm.12165.1.A1_at
Gene name	ABC-type Co2+ transport system, permease component
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.12165.1.A1_at	BI595866	ABC-type Co2+ transport system, permease component	-	4e-1	At1g15900	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.2517.3.A1_x_at	AF371272.1	zein polypeptidesL2b	-	9e-1	At5g62360	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.31	31.6	Zm.5058.1.A1_at	BG266535	hypothetical protein LOC100217195	-	4e+0	At4g33960	unknown protein	S.X.	H.G.	Please select
0.21	15.5	Zm.5965.1.A1_at	AI665966	Hypothetical protein LOC100192560	-	2e+0	At5g19140	AILP1	S.X.	H.G.	Please select
0.20	14.2	Zm.12101.1.A1_at	AY106369.1	hypothetical protein LOC100276199	-	8e-2	At3g62770	AtATG18a	S.X.	H.G.	Please select
0.20	14.2	Zm.18133.1.A1_at	AY103981.1	-	-	8e-38	At1g78570	RHM1 (RHAMNOSE BIOSYNTHESIS 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.6	99.0	GSM253262	ZM_4d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
15.1	98.9	GSM253263	ZM_4d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
14.4	98.9	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM253256	ZM_2d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
10.5	98.4	GSM253264	ZM_4d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
9.1	98.2	GSM253250	ZM_24h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
8.6	98.1	GSM253257	ZM_2d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
8.6	98.1	GSM253252	ZM_24h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
8.4	98.1	GSM253258	ZM_2d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
7.0	97.7	GSM253253	ZM_24h_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-2	40	Zm.12431.1.S1_at	AY106853.1	hypothetical protein LOC100217105	-	4e+0	At4g18400	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.3129.1.A1_at	BM378126	-	-	4e+0	At2g17870	cold-shock DNA-binding family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.8720.1.S1_at	AY303682.1	UDP-glucose-4-epimerase	-	9e-7	At4g23920	UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)	C.G.	S.X.	Please select
0.03	7e-1	34	Zm.8720.2.A1_a_at	BM267300	UDP-glucose-4-epimerase	-	5e+0	At5g16486	-	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.8587.1.A1_at	BE997225	-	-	4e-1	At1g68845	unknown protein	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.6687.1.A1_at	AW438093	phosphoribulokinase	-	3e-31	At1g32060	PRK (PHOSPHORIBULOKINASE)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.5962.2.A1_at	CO532622	hypothetical protein LOC100192869	-	2e-31	At5g51570	band 7 family protein	C.G.	S.X.	Please select
0.04	7e-1	34	Zm.5993.1.S1_at	AI666082	-	-	1e+1	At3g44950	glycine-rich protein	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.3368.1.A1_at	AY107360.1	hypothetical protein LOC100272602	-	4e-31	At1g15500	ATNTT2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	36	Arabidopsis thaliana	At1g15900	838160	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	36	Glycine max	GmaAffx.39967.1.A1_at	BE584010	-	-	3e+0	At1g80180	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	36	Hordeum vulgare	HV_CEa0012B15f_s_at	HV_CEa0012B15f	-	-	3e+0	At5g61170	40S ribosomal protein S19 (RPS19C)	C.G.	S.X.	Please select
0.33	3e-74	280	Oryza sativa	Os10g0533100	AK111957.1	-	Conserved hypothetical protein	5e-1	At2g40020	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.211807.1.S1_at	pmrna23153	hypothetical protein	-	6e-13	At2g48160	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e+0	34	Triticum aestivum	TaAffx.28992.1.S1_at	CA652968	-	-	1e-2	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1622420_at	CF372296	hypothetical protein LOC100255637	-	8e-2	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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