CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.12129.1.S1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 85.8 Zm.12129.1.S1_at BM380039 - - 7e-1 At1g28330 DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1) S.X. H.G.
0.50 65.7 Zm.12621.1.A1_at BU051165 - - 4e-9 At2g24580 sarcosine oxidase family protein S.X. H.G.
0.44 55.7 Zm.8240.1.A1_at BM073391 hypothetical protein LOC100274496 - 5e+0 At5g23900 60S ribosomal protein L13 (RPL13D) S.X. H.G.
0.33 36.0 Zm.4474.2.S1_a_at AY108450.1 hypothetical protein LOC100279979 /// protein phosphatase 2C - 3e+0 At5g46720 - S.X. H.G.
0.23 18.6 ZmAffx.830.1.A1_at AI770534 - - 6e+0 At5g40930 TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4) S.X. H.G.
0.08 3.4 Zm.17506.1.A1_at BM078795 hypothetical protein LOC100191925 - 1e+0 At5g65205 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.4 99.6 GSM320443 protocol: mRNA - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6 98.7 GSM320441 protocol: mRNA - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3 98.0 GSM320440 protocol: mRNA - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5 97.8 GSM253279 ZM_8d_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
6.7 97.6 GSM320439 protocol: mRNA - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6 97.6 GSM320438 protocol: mRNA - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0 97.3 GSM323172 Zm_SG200Dpep1_24hpi_III GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
5.6 97.1 GSM253278 ZM_8d_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
4.8 96.6 GSM253265 ZM_4d_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
4.5 96.3 GSM323170 Zm_SG200Dpep1_24hpi_I GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 7e-2 38 Zm.7992.1.S1_at BM340530 dcp1-like decapping family protein - 3e-6 At1g08370 DCP1 (decapping 1) C.G. S.X.
0.01 7e-2 38 Zm.659.1.S1_at AF366297.1 hypothetical protein LOC100191749 - 4e-3 At1g69500 electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding C.G. S.X.
0.02 3e-1 36 Zm.6820.1.A1_at AI676986 thioredoxin - 1e-5 At3g07090 unknown protein C.G. S.X.
0.01 3e-1 36 Zm.3592.1.S1_at CA401155 - - 1e+1 At5g57230 - C.G. S.X.
0.01 3e-1 36 Zm.17197.1.A1_at CO531814 DNA binding protein - 3e-3 At3g51960 bZIP family transcription factor C.G. S.X.
0.02 3e-1 36 Zm.1589.1.S1_at BE056851 hypothetical protein LOC100192723 - 5e+0 At1g15220 CCMH C.G. S.X.
0.02 1e+0 34 ZmAffx.1037.1.A1_at AI881746 - - 8e-1 At1g46768 RAP2.1 (related to AP2 1) C.G. S.X.
0.02 1e+0 34 ZmAffx.1037.1.S1_at AI881746 hypothetical protein LOC100273161 - 8e-1 At1g46768 RAP2.1 (related to AP2 1) C.G. S.X.
0.02 1e+0 34 Zm.7851.1.A1_at BM074061 hypothetical protein LOC100274880 - 5e+0 At5g61230 ankyrin repeat family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-1 36 Arabidopsis thaliana At1g28330 839729 DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1) dormancy-associated protein (DRM1) - - - C.G. S.X.
0.02 9e-1 36 Glycine max HgAffx.11316.1.S1_at CB935134 - - 5e+0 At5g22200 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein C.G. S.X.
0.21 1e-31 137 Hordeum vulgare Contig7933_s_at Contig7933 - - 5e-1 At5g48540 33 kDa secretory protein-related C.G. S.X.
0.17 2e-12 75 Oryza sativa Os03g0133400 AK073032.1 - Peptidoglycan-binding LysM domain containingprotein 3e+0 At4g03060 AOP2 (ALKENYL HYDROXALKYL PRODUCING 2) C.G. S.X.
0.02 9e-1 36 Populus trichocarpa PtpAffx.218913.1.S1_at pmrna34669 hypothetical protein - 1e+1 At5g61660 glycine-rich protein C.G. S.X.
0.27 8e-16 85 Triticum aestivum Ta.21227.2.S1_a_at CA661665 - - 4e+0 At2g43520 ATTI2 C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1607228_at CF515176 hypothetical protein LOC100245274 - 1e-1 At3g21560 UGT84A2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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