Gene omics information

Query gene ID	Zm.12101.1.A1_at
Gene name	hypothetical protein LOC100276199
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.12101.1.A1_at	AY106369.1	hypothetical protein LOC100276199	-	8e-2	At3g62770	AtATG18a	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.772.1.S1_at	AI746167	-	-	3e+0	At1g30840	ATPUP4	S.X.	H.G.	Please select
0.40	48.5	Zm.12997.1.S1_at	CA402647	-	-	2e-21	At3g46740	TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)	S.X.	H.G.	Please select
0.31	31.6	Zm.9290.1.A1_at	AY108360.1	hypothetical protein LOC100192546	-	7e-1	At5g58260	-	S.X.	H.G.	Please select
0.24	19.8	Zm.10135.1.A1_at	BM381166	-	-	1e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	S.X.	H.G.	Please select
0.24	19.8	Zm.14792.1.A1_at	AI666236	-	-	4e+0	At3g62340	WRKY68	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.5	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
34.9	99.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.0	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.9	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3	99.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.9	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1291	Zm.12101.1.S1_at	AY106369.1	-	-	8e-2	At3g62770	AtATG18a	C.G.	S.X.	Please select
0.48	5e-168	589	Zm.13103.1.S1_at	CO534624	hypothetical protein LOC100191205	-	2e-4	At5g49710	unknown protein	C.G.	S.X.	Please select
0.09	5e-23	107	Zm.12101.2.A1_at	AI833552	-	-	4e+0	At4g34412	-	C.G.	S.X.	Please select
0.09	5e-23	107	Zm.12101.2.S1_at	AI833552	-	-	4e+0	At4g34412	-	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.2685.1.S1_at	AF271384.1	indole-3-glycerol phosphate lyase1	-	5e-2	At3g54640	TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.2135.1.S1_at	CD436684	hypothetical protein LOC100217069	-	4e-26	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.19275.1.A1_at	BM080650	hypothetical protein LOC100191349	-	3e-1	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.1921.1.S1_at	AY108469.1	inorganic phosphate transporter 3	-	3e-16	At5g43340	PHT6	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.18355.1.A1_at	CO532040	SNARE-interacting protein KEULE	-	1e-7	At1g12360	KEU (keule)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-2	38	Arabidopsis thaliana	At3g62770	825452	AtATG18a	Required for autophagosome formation during nutrient deprivation and senescence.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	5e-1	36	Glycine max	PsAffx.C88000045_at	PsAffx.C88000045	-	-	2e+0	At1g19500	unknown protein	C.G.	S.X.	Please select
0.06	1e-2	40	Hordeum vulgare	Contig7792_s_at	Contig7792	-	-	3e-2	At4g24590	unknown protein	C.G.	S.X.	Please select
0.15	7e-10	65	Oryza sativa	Os09g0465500	AK109671.1	-	Conserved hypothetical protein	2e+0	At2g40190	glycosyl transferase family 1 protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.218711.1.S1_at	pmrna34433	hypothetical protein	-	1e+0	At3g51920	CAM9 (CALMODULIN 9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	2e-2	40	Triticum aestivum	Ta.6062.2.S1_a_at	BJ247958	-	-	3e-1	At2g44610	RAB6A	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1607081_at	BQ799686	-	-	4e+0	At4g13870	WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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