Gene omics information

Query gene ID	Zm.1207.1.A1_at
Gene name	growth-regulating factor 11-like
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	96.3	Zm.1207.1.A1_at	CO525598	growth-regulating factor 11-like	-	6e+0	At5g15948	CPuORF10 (Conserved peptide upstream open reading frame 10)	S.X.	H.G.	Please select
0.82	94.6	Zm.6357.1.S1_at	AY103601.1	catalase1	-	8e-85	At4g35090	CAT2 (CATALASE 2)	S.X.	H.G.	Please select
0.80	94.0	ZmAffx.123.1.S1_at	AI665878	-	-	8e-1	At5g15200	40S ribosomal protein S9 (RPS9B)	S.X.	H.G.	Please select
0.78	92.5	Zm.6351.1.S1_at	AY105055.1	hypothetical protein LOC100277708	-	5e-1	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1108.1.A1_at	AW216343	hypothetical protein LOC100191835	-	3e+0	At4g12810	F-box family protein	S.X.	H.G.	Please select
0.59	76.1	Zm.5897.1.A1_at	CA404128	hypothetical protein LOC100193663	-	9e-38	At3g47520	MDH (MALATE DEHYDROGENASE)	S.X.	H.G.	Please select
0.56	74.4	ZmAffx.997.1.S1_at	AI857164	-	-	3e+0	At5g25990	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.15578.1.A1_at	CD448284	-	-	8e+0	At5g61310	cytochrome c oxidase subunit Vc, putative / COX5C, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.3	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	7e-7	54	Zm.4669.1.S1_at	AI737897	Growth-regulating factor 9-like	-	5e-5	At3g52910	AtGRF4 (GROWTH-REGULATING FACTOR 4)	C.G.	S.X.	Please select
0.03	1e-2	40	Zm.8134.1.S1_at	BM073042	snRK1-interacting protein 1	-	7e+0	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	C.G.	S.X.	Please select
0.06	1e-2	40	Zm.18354.1.A1_at	CO532792	hypothetical protein LOC100191832	-	6e-3	At4g15120	VQ motif-containing protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.4534.1.A1_at	BU582020	-	-	7e+0	At4g35390	AGF1 (AT-hook protein of GA feedback 1)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.2746.1.A1_at	AW067062	growth-regulating factor 5-like	-	9e-20	At2g36400	AtGRF3 (GROWTH-REGULATING FACTOR 3)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.14342.1.S1_at	CA399127	-	-	2e-24	At1g53050	protein kinase family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.10659.1.A1_at	BQ538878	hypothetical protein LOC100191609	-	5e-2	At5g27440	unknown protein	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.3817.1.S1_at	BG841104	-	-	1e-6	At5g63970	copine-related	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.13753.1.S1_at	AY105897.1	-	-	5e-46	At4g16760	ACX1 (ACYL-COA OXIDASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At5g15948	6240908	CPuORF10 (Conserved peptide upstream open reading frame 10)	Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF10 represents a conserved upstream opening reading frame relative to major ORF AT5G15950.1	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.10115.1.S1_at	BQ081312	-	-	8e-1	At1g32600	F-box family protein-related	C.G.	S.X.	Please select
0.03	2e-1	36	Hordeum vulgare	Contig12196_at	Contig12196	-	-	2e-2	At1g79110	protein binding / zinc ion binding	C.G.	S.X.	Please select
Os04g0307300	0.11	1e-11	Oryza sativa	Os06g0204800	-	-	-	0			C.G.	S.X.	Please select
0.03	9e+0	32	Populus trichocarpa	PtpAffx.61263.1.A1_at	DN486926	-	-	2e+0	At5g64880	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	4e-1	36	Triticum aestivum	TaAffx.128605.1.S1_at	CD902744	-	-	2e+0	At3g42310	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1622631_at	CA818766	-	-	3e+0	At2g15325	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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