Gene omics information

Query gene ID	Zm.12065.1.S1_at
Gene name	hypothetical protein LOC100275823
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	94.6	Zm.12065.1.S1_at	CD219268	hypothetical protein LOC100275823	-	5e-1	At5g52605	-	S.X.	H.G.	Please select
0.64	81.7	Zm.18885.1.A1_at	CO530040	hypothetical protein LOC100276818	-	3e+0	At5g28780	unknown protein	S.X.	H.G.	Please select
0.64	81.7	Zm.17331.1.A1_at	CF631030	-	-	1e-3	At5g51640	YLS7	S.X.	H.G.	Please select
0.50	65.7	Zm.2264.1.A1_at	CF052773	-	-	5e+0	At5g45550	mob1/phocein family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.16056.1.S1_at	CD994891	hypothetical protein LOC100279380	-	1e-3	At3g11120	60S ribosomal protein L41 (RPL41E)	S.X.	H.G.	Please select
0.47	59.9	Zm.8996.1.A1_at	AY109834.1	-	-	5e-2	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	S.X.	H.G.	Please select
0.46	58.4	Zm.3996.1.S1_at	CD436900	hypothetical protein LOC100274383	-	2e-11	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	S.X.	H.G.	Please select
0.44	55.7	Zm.6474.2.S1_a_at	CA402315	dephospho-CoA kinase	-	2e+0	At5g03980	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please select
0.31	31.6	Zm.5851.8.S1_a_at	X85334.1	ZEM3	-	1e-7	At4g18960	AG (AGAMOUS)	S.X.	H.G.	Please select
0.26	22.7	Zm.10393.1.S1_at	AI676981	-	-	2e+0	At5g11425	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.0	99.5	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM253274	ZM_8d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
20.2	99.3	GSM253262	ZM_4d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
19.9	99.3	GSM253275	ZM_8d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
19.3	99.3	GSM253264	ZM_4d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
18.7	99.2	GSM253276	ZM_8d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
14.5	98.9	GSM253263	ZM_4d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
10.8	98.5	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
10.5	98.4	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
9.5	98.3	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	8e-106	383	Zm.5340.1.A1_at	AY106652.1	hypothetical protein LOC100276501	-	5e+0	At5g52605	-	C.G.	S.X.	Please select
0.03	9e-7	54	Zm.6934.1.A1_at	AY105351.1	hypothetical protein LOC100273323	-	9e-6	At3g01790	ribosomal protein L13 family protein	C.G.	S.X.	Please select
0.02	1e-5	50	Zm.124.1.S1_at	CF058601	dof zinc finger protein MNB1A	-	7e-7	At3g52440	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.03	6e-5	48	Zm.3792.1.S1_at	CA826763	hypothetical protein LOC100276631	-	9e-2	At2g45450	ZPR1 (LITTLE ZIPPER 1)	C.G.	S.X.	Please select
0.02	2e-4	46	Zm.18496.1.S1_at	CO519895	hypothetical protein LOC100217235	-	2e-1	At5g05100	nucleic acid binding	C.G.	S.X.	Please select
0.02	2e-4	46	Zm.13364.1.A1_at	CA989003	-	-	3e+0	At1g22910	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	9e-4	44	Zm.13246.1.S1_at	AY135019.1	PL transcription factor	-	5e-7	At3g13540	ATMYB5 (MYB DOMAIN PROTEIN 5)	C.G.	S.X.	Please select
0.02	9e-4	44	Zm.10313.1.S1_at	AY082396.1	knotted1-interacting protein	-	2e-7	At2g16400	BLH7 (bell1-like homeodomain 7)	C.G.	S.X.	Please select
0.02	3e-3	42	Zm.436.1.S1_at	AF100455.1	liguleless3	-	2e-10	At1g62360	STM (SHOOT MERISTEMLESS)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	36	Arabidopsis thaliana	At5g52605	3771495	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-4	46	Glycine max	Gma.542.1.S1_at	CD400586	-	-	4e-1	At4g37790	HAT22	C.G.	S.X.	Please select
0.37	6e-70	264	Hordeum vulgare	Contig8658_at	Contig8658	-	-	1e-1	At5g46890	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.41	6e-104	379	Oryza sativa	Os03g0765400	AK100035.1	-	Conserved hypothetical protein	1e+0	At1g65484	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.214754.1.S1_at	pmrna28589	hypothetical protein	-	2e+1	At4g21780	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	1e-23	111	Triticum aestivum	Ta.12530.1.S1_at	BM138339	-	-	5e+0	At5g50510	-	C.G.	S.X.	Please select
0.03	6e-1	34	Vitis vinifera	1610864_at	CF606964	-	-	3e+0	At2g41420	proline-rich family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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