Gene omics information

Query gene ID	Zm.12050.1.A1_at
Gene name	early flowering 4
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.12050.1.A1_at	BM416823	early flowering 4	-	1e+0	At5g16030	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.3892.5.A1_at	BM079634	60S ribosomal protein L28	-	6e-7	At2g19730	60S ribosomal protein L28 (RPL28A)	S.X.	H.G.	Please select
0.50	65.7	Zm.14068.1.S1_at	AI920492	vacuolar protein-sorting protein 45	-	2e-23	At1g77140	VPS45 (VACUOLAR PROTEIN SORTING 45)	S.X.	H.G.	Please select
0.46	58.4	Zm.1829.1.S1_at	AY103809.1	-	-	3e+0	At5g17710	EMB1241 (embryo defective 1241)	S.X.	H.G.	Please select
0.42	51.3	ZmAffx.521.1.A1_at	AI711634	hypothetical protein LOC100193955	-	3e+0	At5g27880	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.38	44.2	Zm.18531.1.A1_at	BE575145	hypothetical protein LOC100192889	-	2e+0	At4g21280	oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)	S.X.	H.G.	Please select
0.34	37.2	Zm.5253.1.S1_at	BM080619	60S ribosomal protein L34	-	5e-19	At3g28900	60S ribosomal protein L34 (RPL34C)	S.X.	H.G.	Please select
0.33	36.0	Zm.4084.1.A1_at	CK145425	CONSTANS interacting protein 6	-	8e-1	At5g28800	unknown protein	S.X.	H.G.	Please select
0.31	31.6	Zm.10798.1.A1_at	CF003582	Hypothetical protein LOC100191405	-	1e-2	At1g26930	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.30	29.8	Zm.4682.1.S1_at	AI737946	acyl-desaturase	-	1e-1	At5g16230	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.4	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.6	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
7.2	97.8	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.7	97.6	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.5	97.5	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.72	5e-140	496	Zm.7760.1.A1_s_at	BM080238	hypothetical protein LOC100279754 /// early flowering 4	-	1e+0	At5g16030	unknown protein	C.G.	S.X.	Please select
0.13	7e-25	113	Zm.1247.1.S1_at	BE575051	EARLY flowering 4 protein	-	4e+0	At3g17570	F-box family protein	C.G.	S.X.	Please select
0.01	6e-4	44	Zm.41.1.S1_at	AI600908	calcium dependent protein kinase1	-	1e-16	At2g46700	calcium-dependent protein kinase, putative / CDPK, putative	C.G.	S.X.	Please select
0.01	3e-2	38	Zm.14573.1.S1_at	CO527252	glucan endo-1,3-beta-glucosidase 7	-	9e-1	At3g46570	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.04	1e-1	36	Zm.6779.2.S1_a_at	AY107207.1	-	-	3e+0	At4g21460	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	36	Zm.6779.2.S1_s_at	AY107207.1	hypothetical protein LOC100275106	-	3e+0	At4g21460	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.6779.1.S1_at	CA405303	hypothetical protein LOC100273623	-	1e+0	At4g09250	-	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.6195.1.A1_at	AI668513	hypothetical protein LOC100275106	-	4e+0	At4g17790	-	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.6195.1.A1_x_at	AI668513	hypothetical protein LOC100275106	-	4e+0	At4g17790	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At5g16030	831460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	40	Glycine max	Gma.2126.1.S1_at	CD413692	-	-	7e-9	At1g72630	ELF4-L2 (ELF4-Like 2)	C.G.	S.X.	Please select
0.13	3e-18	91	Hordeum vulgare	Contig11576_at	Contig11576	-	-	4e-1	At3g58150	-	C.G.	S.X.	Please select
0.21	2e-59	230	Oryza sativa	Os03g0410300	AK071843.1	-	Protein of unknown function DUF1313 family protein	1e-4	At1g72630	ELF4-L2 (ELF4-Like 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-2	40	Populus trichocarpa	PtpAffx.200114.1.S1_at	pmrna210	hypothetical protein	-	2e-1	At1g28040	protein binding / zinc ion binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.24	7e-67	254	Triticum aestivum	TaAffx.26983.1.S1_at	CK161831	-	-	1e-2	At1g49770	RGE1 (RETARDED GROWTH OF EMBRYO 1)	C.G.	S.X.	Please select
0.04	2e-3	42	Vitis vinifera	1618652_at	CF208532	hypothetical protein LOC100266924	-	2e-9	At2g06255	ELF4-L3 (ELF4-Like 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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