Gene omics information

Query gene ID	Zm.11999.1.A1_at
Gene name	hypothetical protein LOC100191418
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	81.7	Zm.11999.1.A1_at	CK827525	hypothetical protein LOC100191418	-	3e-1	At1g62421	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.8563.1.A1_at	BM336306	hypothetical protein LOC100193983	-	9e-15	At1g23110	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.9319.1.A1_at	CF627080	hypothetical protein LOC100216855	-	2e+0	At5g10000	ATFD4 (ferredoxin 4)	S.X.	H.G.	Please select
0.40	48.5	Zm.8565.1.S1_at	CO528893	hypothetical protein LOC100279882	-	8e-7	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	S.X.	H.G.	Please select
0.38	44.2	Zm.15436.1.S1_at	CD437346	-	-	2e+0	At5g37750	heat shock protein binding / unfolded protein binding	S.X.	H.G.	Please select
0.33	36.0	ZmAffx.1084.1.S1_at	AI987532	-	-	4e+0	At1g31760	SWIB complex BAF60b domain-containing protein	S.X.	H.G.	Please select
0.27	24.6	Zm.15903.1.S1_at	L77912.1	phenylalanine ammonia-lyase	-	2e-14	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	S.X.	H.G.	Please select
0.20	14.2	Zm.8233.1.S1_a_at	AY103797.1	-	-	6e-14	At2g24590	splicing factor, putative	S.X.	H.G.	Please select
0.19	12.8	Zm.4250.1.A1_at	T18710	autophagy-related 3	-	8e-13	At5g61500	ATG3	S.X.	H.G.	Please select
0.18	11.6	Zm.14591.3.S1_a_at	CK370424	triosephosphate isomerase, cytosolic	-	3e-7	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.7	99.3	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
16.5	99.0	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
14.2	98.8	GSM206306	Lower pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.1	98.5	GSM206299	Left pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.8	98.3	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.4	98.1	GSM206292	Upper pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.4	98.1	GSM206302	Upper pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.2	98.0	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.3	97.4	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.2	97.4	GSM375796	Deep-sowing 10d treatment GA3, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-11	67	Zm.14817.1.A1_at	AI692070	hypothetical protein LOC100279996	-	3e-2	At5g64570	XYL4	C.G.	S.X.	Please select
0.03	1e-2	40	Zm.17439.1.A1_at	CK347738	hypothetical protein LOC100278297	-	6e-9	At3g06180	structural constituent of ribosome	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.4144.1.S1_at	AY104561.1	-	-	5e-1	At1g62421	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.3526.1.S1_at	CF041723	hypothetical protein LOC100272649	-	3e+0	At2g01890	PAP8 (PURPLE ACID PHOSPHATASE 8)	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.338.1.A1_at	CF626535	somatic embryogenesis receptor-like kinase1	-	4e-34	At1g71830	SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.7386.1.S1_at	BM334549	DNA binding protein	-	1e-1	At3g50330	HEC2 (HECATE 2)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.6054.1.A1_at	AW497492	-	-	3e+0	At5g25490	zinc finger (Ran-binding) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5808.1.A1_at	BM078229	peroxidase 39	-	7e-1	At5g58400	peroxidase, putative	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.19094.1.S1_at	CO522607	hypothetical protein LOC100279575	-	2e-4	At1g14540	anionic peroxidase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	Arabidopsis thaliana	At1g62421	5007831	unknown protein	F:unknown;P:unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	36	Glycine max	PsAffx.CL1560Contig1_s_at	PsAffx.CL1560Contig1	-	-	1e+1	At5g64400	-	C.G.	S.X.	Please select
0.25	1e-88	325	Hordeum vulgare	Contig5703_at	Contig5703	beta-D-xylosidase	-	5e+0	At1g78060	glycosyl hydrolase family 3 protein	C.G.	S.X.	Please select
0.22	1e-57	224	Oryza sativa	Os02g0752200	AK119887.1	-	Beta-D-xylosidase	1e-3	At1g78060	glycosyl hydrolase family 3 protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-3	44	Populus trichocarpa	Ptp.1752.2.A1_s_at	CV255174	hypothetical protein	-	5e+0	At5g15581	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	5e-68	258	Triticum aestivum	Ta.25762.1.S1_at	CD928919	hypothetical LOC542807	-	2e+1	At5g41390	-	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1614876_at	CF213268	hypothetical protein LOC100244642	-	1e+0	At1g73510	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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