Gene omics information

Query gene ID	Zm.11992.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.39	45.6	Zm.11992.1.A1_at	BM382475	-	-	3e+0	At5g41614	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.5729.1.A1_at	AI637125	peptidoglycan binding domain containing protein	-	3e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	S.X.	H.G.	Please select
0.67	85.8	Zm.2906.1.S1_at	AY110115.1	somatic embryogenesis receptor-like kinase2	-	2e-51	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	S.X.	H.G.	Please select
0.67	85.8	Zm.17172.1.A1_at	AI664919	-	-	2e+0	At1g55675	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.11598.1.A1_at	BM379212	-	-	1e+0	At5g11990	proline-rich family protein	S.X.	H.G.	Please select
0.61	79.5	Zm.737.2.A1_at	AI746142	-	-	4e-6	At5g60360	AALP (Arabidopsis aleurain-like protease)	S.X.	H.G.	Please select
0.59	76.1	Zm.13202.1.A1_at	CA403491	hypothetical protein LOC100273129	-	1e-8	At1g56590	clathrin adaptor complexes medium subunit family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.791.1.S1_s_at	AY111675.1	hypothetical protein LOC100280140	-	3e+0	At4g16720	60S ribosomal protein L15 (RPL15A)	S.X.	H.G.	Please select
0.46	58.4	Zm.12678.2.S1_at	CN844593	-	-	8e-11	At3g05030	NHX2 (SODIUM HYDROGEN EXCHANGER 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
43.9	100.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.9	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.1	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.5	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-2	36	Zm.6101.1.A1_at	AY108448.1	hypothetical protein LOC100273521	-	1e-2	At4g31580	SRZ-22	C.G.	S.X.	Please select
0.03	4e-1	34	Zm.7272.1.S1_at	BI430568	hypothetical protein LOC100275279	-	1e+0	At3g28590	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	Zm.15186.1.A1_at	BM266745	-	-	4e-1	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5898.1.A1_at	CF631996	hyoscyamine 6-dioxygenase	-	2e-1	At1g80610	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5875.1.A1_at	CA402986	hypothetical protein LOC100193662	-	7e+0	At3g15640	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5674.1.S1_at	BM380629	hypothetical protein LOC100194231	-	1e+1	At3g24516	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.5507.1.A1_at	AI622315	hypothetical protein LOC100276819	-	5e+0	At5g02420	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.5507.1.S1_at	CN071496	-	-	5e+0	At5g02420	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5230.1.A1_at	CA404914	acyl-desaturase	-	2e-17	At2g43710	SSI2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e+0	32	Arabidopsis thaliana	At5g41614	6240275	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	3e-1	36	Glycine max	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	Contig23108_at	Contig23108	-	-	8e-1	At3g16280	DNA binding / transcription factor	C.G.	S.X.	Please select
0.16	1e-7	57	Oryza sativa	Os01g0186500	9629.m00858	-	-	9e-2	At2g29050	ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	8e-2	38	Populus trichocarpa	PtpAffx.217746.1.S1_at	pmrna33134	hypothetical protein	-	3e+0	At5g38440	self-incompatibility protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	9e-1	34	Triticum aestivum	TaAffx.132143.3.S1_at	CA696426	-	-	1e+0	At2g42850	CYP718	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1616636_at	CF404156	hypothetical protein LOC100262356	-	7e-1	At2g41750	DTW domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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