Gene omics information

Query gene ID	Zm.11955.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.11955.1.A1_at	BM382121	-	-	4e+0	At1g49030	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.13283.1.S1_at	CA826693	-	-	4e+0	At1g04778	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.11827.1.A1_at	BM381077	hypothetical protein LOC100192043	-	4e+0	At3g55820	-	S.X.	H.G.	Please select
0.40	48.5	Zm.8357.1.A1_at	BM267266	-	-	1e-4	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	S.X.	H.G.	Please select
0.38	44.2	Zm.11710.1.A1_at	BM380117	-	-	1e+0	At5g15853	unknown protein	S.X.	H.G.	Please select
0.22	16.9	Zm.11663.1.A1_at	CO531620	hypothetical protein LOC100273622	-	2e+0	At4g28170	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.9	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-11	67	Zm.3613.1.A1_at	BG841007	hypothetical protein LOC100273532	-	4e-24	At5g10540	peptidase M3 family protein / thimet oligopeptidase family protein	C.G.	S.X.	Please select
0.06	2e-9	61	Zm.10071.1.A1_at	BM378922	-	-	2e+0	At5g38890	exoribonuclease-related	C.G.	S.X.	Please select
0.03	6e-3	40	Zm.13750.1.A1_at	AY105949.1	cyclin-H	-	7e-8	At5g27620	CYCH	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.14302.6.A1_at	AI734605	-	-	1e-16	At2g27020	PAG1	C.G.	S.X.	Please select
0.01	4e-1	34	Zm.506.1.A1_at	AF061838.1	6-phosphogluconate dehydrogenase2	-	5e-55	At3g02360	6-phosphogluconate dehydrogenase family protein	C.G.	S.X.	Please select
0.03	4e-1	34	Zm.17923.1.A1_at	AY110526.1	hypothetical protein LOC100276264	-	1e-1	At2g44840	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.17164.1.S1_at	AY188756.1	GCK-like kinase MIK	-	7e-27	At3g15220	protein kinase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5341.1.S1_at	AY105785.1	hypothetical protein AY105785 /// hypothetical protein LOC100272740	-	1e-14	At2g14260	PIP	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.406.2.A1_a_at	CK348246	NADPH producing dehydrogenase of the oxidative pentose phosphate pathway	-	1e-12	At3g02360	6-phosphogluconate dehydrogenase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At1g49030	841326	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.psMA012xH06f_s_at	PsAffx.psMA012xH06f	-	-	2e-1	At5g61130	PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	Contig7052_s_at	Contig7052	-	-	2e-1	At1g09700	HYL1 (HYPONASTIC LEAVES 1)	C.G.	S.X.	Please select
0.10	2e-12	73	Oryza sativa	Os02g0830000	AK101841.1	-	TPR-like domain containing protein	4e-3	At3g62890	binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.220455.1.S1_at	pmrna36847	hypothetical protein	-	3e+0	At2g27285	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.30845.1.S1_at	CA621613	-	-	1e+0	At5g17620	-	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1612783_at	CF414320	-	-	2e+1	At5g20440	protein binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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