Gene omics information

Query gene ID	Zm.11935.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.11935.1.A1_at	BM381982	-	-	6e-1	At1g25420	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.4230.1.S1_at	CO523811	-	-	4e-5	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	S.X.	H.G.	Please select
0.50	65.7	Zm.8449.1.A1_at	CK828099	hypothetical protein LOC100276511	-	8e-1	At3g61070	PEX11E	S.X.	H.G.	Please select
0.44	55.7	Zm.8446.1.A1_at	CD436884	hypothetical protein LOC100194006 /// hypothetical protein LOC100276606	-	5e-11	At1g32070	ATNSI (NUCLEAR SHUTTLE INTERACTING)	S.X.	H.G.	Please select
0.33	36.0	Zm.17334.1.A1_at	CK370011	-	-	1e+1	Atcg00420	-	S.X.	H.G.	Please select
0.11	5.3	Zm.889.1.A1_s_at	M55021.1	-	-	2e-12	At4g38740	ROC1 (ROTAMASE CYP 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.0	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	6e-2	36	Zm.2433.1.S1_at	AY103747.1	hypothetical protein LOC100191762	-	3e-14	At3g14940	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	C.G.	S.X.	Please select
0.02	6e-2	36	Zm.2111.1.A1_at	BM337757	stem 28 kDa glycoprotein	-	9e+0	At5g47680	-	C.G.	S.X.	Please select
0.03	2e-1	34	ZmAffx.11.1.S1_at	U14598.1	-	-	5e-1	At3g22275	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	34	Zm.9371.3.A1_x_at	BM333622	hypothetical protein LOC100275410	-	1e+0	At1g53160	SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)	C.G.	S.X.	Please select
0.03	2e-1	34	Zm.9371.1.A1_a_at	BM350310	-	-	1e+0	At1g53160	SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)	C.G.	S.X.	Please select
0.03	2e-1	34	Zm.9371.1.A1_x_at	BM350310	hypothetical protein LOC100275410	-	1e+0	At1g53160	SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)	C.G.	S.X.	Please select
0.03	2e-1	34	Zm.9371.2.S1_a_at	CF631830	hypothetical protein LOC100275410	-	5e-1	At1g25420	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	34	Zm.9371.2.S1_x_at	CF631830	hypothetical protein LOC100275410	-	5e-1	At1g25420	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.9601.1.A1_at	BM339800	-	-	6e+0	At2g31610	40S ribosomal protein S3 (RPS3A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-1	34	Arabidopsis thaliana	At1g25420	839128	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PMFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	5e-2	38	Glycine max	Gma.1.1.A1_at	U36442.1	lipoxygenase	-	5e-1	At5g20180	ribosomal protein L36 family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Hordeum vulgare	Contig17631_at	Contig17631	-	-	5e+0	At5g45450	iron transporter-related	C.G.	S.X.	Please select
0.04	1e+0	34	Oryza sativa	Os04g0640100	9632.m05320	-	-	5e+0	At5g50200	WR3 (WOUND-RESPONSIVE 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	8e-1	34	Populus trichocarpa	PtpAffx.223395.1.S1_x_at	pmrna41374	-	-	3e+0	At1g68585	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e+0	32	Triticum aestivum	Ta.28208.1.A1_x_at	BJ299269	-	-	7e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	C.G.	S.X.	Please select
0.07	3e+0	30	Vitis vinifera	1620857_at	CF207003.1	-	-	4e-2	At1g13635	methyladenine glycosylase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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