Gene omics information

Query gene ID	Zm.11920.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	81.7	Zm.11920.1.A1_at	BM381842	-	-	2e-2	At3g03020	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.14391.1.A1_at	CA998702	hypothetical protein LOC100273626	-	1e-7	At4g02630	protein kinase family protein	S.X.	H.G.	Please select
0.59	76.1	Zm.15550.1.S1_a_at	AI491343	hypothetical protein LOC100191653 /// protein phosphatase 2C	-	5e-9	At5g66080	protein phosphatase 2C family protein / PP2C family protein	S.X.	H.G.	Please select
0.59	76.1	Zm.19008.1.A1_at	CF011535	-	-	6e-3	At4g36770	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	S.X.	H.G.	Please select
0.39	45.6	Zm.3591.2.A1_at	AW498095	hypothetical protein LOC100280276	-	5e-2	At3g16500	PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1)	S.X.	H.G.	Please select
0.35	38.9	Zm.4497.1.A1_at	BM336128	hypothetical protein LOC100193897	-	7e-1	At2g20940	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.5274.1.S1_at	CD990782	triose phosphate/phosphate translocator, non-green plastid,chloroplast	-	4e-18	At5g33320	CUE1 (CAB UNDEREXPRESSED 1)	S.X.	H.G.	Please select
0.33	36.0	Zm.9654.1.A1_at	BM351433	-	-	3e-1	At2g44420	protein N-terminal asparagine amidohydrolase family protein	S.X.	H.G.	Please select
0.30	29.8	Zm.4300.2.S1_a_at	AI881611	hypothetical protein LOC100274411	-	3e-8	At5g09880	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.29	28.1	Zm.3492.1.A1_at	BG550327	hypothetical protein LOC100275578	-	2e-1	At1g16490	MYB58 (MYB DOMAIN PROTEIN 58)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
60.2	100.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
53.3	100.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
37.8	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	8e-6	50	Zm.9423.1.A1_at	BM268754	IDP2449 protein	-	1e-1	At4g29210	GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4)	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.9862.1.A1_at	BM341467	-	-	2e+1	At5g53820	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.4870.2.S1_a_at	CF023956	dehydrin	-	3e-6	At3g50980	XERO1 (DEHYDRIN XERO 1)	C.G.	S.X.	Please select
0.01	5e-1	34	ZmAffx.1217.1.S1_s_at	40794996-164	-	-	3e-76	Atmg00030	-	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.6136.1.A1_at	BM074048	early fruit mRNA	-	2e-7	At4g32610	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.12272.1.A1_at	BM351641	-	-	3e+0	At4g16240	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.13828.1.S1_at	AY104425.1	-	-	5e-5	At1g30040	ATGA2OX2 (GIBBERELLIN 2-OXIDASE)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.13065.1.A1_at	CD437453	sarcosine oxidase	-	5e-5	At2g24580	sarcosine oxidase family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.1194.1.S1_at	CA403262	fasciclin-like arabinogalactan protein 10	-	2e-1	At5g52930	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-2	40	Arabidopsis thaliana	At3g03020	821156	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	HgAffx.4126.1.A1_at	CK348564	-	-	2e-1	At1g63105	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	HV14K06u_x_at	HV14K06u	-	-	3e-3	At5g56750	Ndr family protein	C.G.	S.X.	Please select
0.04	5e-1	36	Oryza sativa	OsAffx.28941.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-2	40	Populus trichocarpa	Ptp.5455.1.S1_at	BU829455	-	-	5e-6	At3g26790	FUS3 (FUSCA 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	Ta.7346.2.S1_at	BJ313080	-	-	5e-2	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1608483_at	CF203027.1	hypothetical protein LOC100263292	-	2e-11	At5g18400	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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