Gene omics information

Query gene ID Zm.11891.1.A1_at
Gene name helix-loop-helix DNA-binding domain containing protein
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5065.7Zm.11891.1.A1_atBM381583helix-loop-helix DNA-binding domain containing protein-6e-2At5g42420transporter-relatedS.X.H.G.
0.5369.1Zm.9079.1.A1_atCN844993hypothetical protein LOC100217287-6e-3At1g13890SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)S.X.H.G.
0.4658.4Zm.11781.1.A1_atBM380704--1e+0At4g40090AGP3 (arabinogalactan-protein 3)S.X.H.G.
0.3336.0Zm.1247.1.S1_atBE575051EARLY flowering 4 protein-4e+0At3g17570F-box family proteinS.X.H.G.
0.3029.8Zm.12384.1.A1_atAY111304.1--5e-4At3g23340ckl10 (Casein Kinase I-like 10)S.X.H.G.
0.2724.6Zm.16578.1.A1_a_atCK369163--3e-1At5g37820NIP4S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
29.799.8GSM206332Lower pulvinus 15 min polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinus
19.999.3GSM206314Upper pulvinus 15 min total RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinus
16.399.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.698.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.198.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.798.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.498.7GSM375788Deep-sowing 10d treatment Control, biological rep1GSE15048Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
12.098.6GSM320443protocol: mRNA - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.598.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.398.4GSM375795Deep-sowing 10d treatment Control, biological rep2GSE15048Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-342Zm.11662.1.A1_atBM379784--6e-1At1g50930unknown proteinC.G.S.X.
0.026e-340Zm.19057.1.A1_atCO525209--4e-2At5g05280zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.033e-238Zm.9441.1.A1_atAY105453.1hypothetical protein LOC100278105-1e+0At2g33790AGP30 (ARABINOGALACTAN PROTEIN30)C.G.S.X.
0.033e-238Zm.11794.1.A1_atBM380817hypothetical protein LOC100274968-5e+0At1g26300BSD domain-containing proteinC.G.S.X.
0.033e-238Zm.1140.1.S1_atBM073428hypothetical protein LOC100279272-4e-14At3g49670BAM2 (BARELY ANY MERISTEM 2)C.G.S.X.
0.043e-238Zm.10488.1.S1_atCF011147hypothetical protein LOC100272314-4e-1At5g23090NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)C.G.S.X.
0.033e-238Zm.10514.1.S1_atBQ485919--4e-1At5g51120PABN1 (POLYADENYLATE-BINDING PROTEIN 1)C.G.S.X.
0.011e-136Zm.4273.2.A1_atAI665197heat shock 70 kDa protein 4-3e-10At1g79920ATP bindingC.G.S.X.
0.021e-136Zm.17176.1.S1_atCA402972hypothetical protein LOC100272579 /// hypothetical protein LOC100275541-5e-2At3g10040transcription factorC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.036e-238Arabidopsis thalianaAt5g42420834248transporter-relatedF:unknown;P:unknown;C:membrane;PMFOB---C.G.S.X.
0.043e-136Glycine maxPsAffx.C19000133_atPsAffx.C19000133--6e-2At1g49400emb1129 (embryo defective 1129)C.G.S.X.
0.045e-444Hordeum vulgareContig25677_atContig25677--8e-2At1g49010myb family transcription factorC.G.S.X.
0.063e-550Oryza sativaOs.7116.1.S1_at---0C.G.S.X.
0.043e-136Populus trichocarpaPtpAffx.28965.1.S1_atDN484862--7e-1At3g56850AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3)C.G.S.X.
0.046e-238Triticum aestivumTaAffx.25322.1.S1_atCA702534--1e+0At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)C.G.S.X.
0.047e-236Vitis vinifera1620337_atCF213940similar to ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5); calmodulin binding / cyclic nucleotide binding / potassium channel-2e-5At5g62500ATEB1B (END BINDING PROTEIN 1B)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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